Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1472 ATGAAAATGGTCTCTAACTTGTCTTTGATCACTAACAAAAAAATGGAAGGAAATGTTGGAATGGGACTTATTGGAGAGAACTTTGATTCTGGTTTGCTTGGAAGGCTGAGGGATGATGACTATGAAAGCAGGTCTGGAAGTGAGAATTTTGATGATCTTTCTGGTGATGACCTTGATGTTGCTGATGATCAGCCAAAGAGCAAGAAGAAGAAGAAGTATCATAGGCACACTCCTCAACAAATTCAGGAGCTCGAAACTTTCTTCAAGGAGTGTCCACATCCTGATGAGAAGCAAAGAACTGACCTTAGCAAGAAGCTTGGCTTGGCAAACAAACAAGTCAAGTTCTGGTTTCAGAATCGGCGAACTCAGATGAAGACGCAACTGGAACGCCATGAGAATATGATTCTGAGGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTTTGTTGAAAGATGCTATGTCAAATCCGACATGCAGCAACTGCGGTGGCCCAGCAATTCCTGGACAATTTTCGCCGGAGGACCACCAGCTTAGGGTTGAAAATGCCAGACTGAAAGAGGAATTGGGCCGAGTGTCTACCTTGACCCACAAGTTCTTCGGCCGACCTGTCTCGGCATTTGGCTCCATAACTATGCCAAATCCAAATTCTGGCTTTGAACTTGGTATGGGAAGGAATGGTGTTGTTGGTCCAAGCAATTTCAACATGTCGCTGCCGATGGGATTTGGTATGGGAGACGGAGTTATGGGAGCTCCTGCGCTACAATCTGGATTGCAATCACCGATGGGAATGATCGGAAATACTGCTCAGCAAGAGAGAGCTATGCTTATTGATCTTGCACAAGCTGCTATGGATGAACTAATCAGTATGTCTCAGCCTGATTCTCCTCTCTGGATTAAGAGTTTGGATGGTGTGAACGAAGTGCTGAACTATGACGAGTATGCAAAGGTCAATTCTCTTTTTAACGATCCGAAACAAAATGGTTTTGTAACTGAAGCTACAAGACAAACTGGACTGTTATTAATCAACAGTGCAGGTCTTGTGGAAACCATGTTGGATGCGGATCAGTGGGCAGAAATGTTTCCATGTATGATTGCTGGAGCTTCAACCTTGGATGTAATATCTAGTGGAATGAATGGAACCAGGAGTGGATCTTTGCAAGTGATGCAAGCCGAGGTTCAATTGCCTTCTCCGTTAGTCCCGGTTCGACAATATAGTTTCCTGAGGTTTGCAAAGCAGCATGTTGGAGGTATTTGGGTTGTGGTTGATGTTTCGGTCAACGTCGGCCGTAATGCTGCTAATGGAAACCCTTACATGAGCTGTAAGAAGCTTCCTTCTGGCTGTATTTTGGAGGATTTGCCTAACGGTTTTTGCAAAATTACTTGGGTTGATCATTCCCAATATGATGAGAGTGTTGTCCACCAAGCCTATCGTCCATTGGTTAATTCCGGCATGGCATTTGGTGCTCATAGATGGGTTGCAACTCTCCAGAGGCAGTGTGATTCCCTCGCAGTCTCCATGTCACAATCTGATGATCCCACAGCCATGACTCCACATGGTAAGAAAAGCATGCTGAAGCTCGCACAGAGGATGTCCGATTACTTCTGGTCAGGAATCTGTCCTTCGACTGCGTGCAAGTGGGATATCCTTCCCATTAGCAACATGGGCGACAGTGACCTGAAAATCATGTATCGGCAACATCCAGATGCCAATTCGAGCATCGTGCTAAGTGCTGCAACTTCTGTTTGGATTCCATTGCCTCGGCAAAGGGTGTTTGATTTTCTCCGTGAGGCACAGATGAGAGGCGGGTGGGATGCTTTGTCCAATGGTGGACCAATGCAGGAGGTGGTCCACATTGCTAAAGGACAAGCACTTGGAAATTCCATTTCTATTCTTAGTCTCAATAATGCTGTGAATCCGAATGGAAATGAGGGAAGCAATCTATACCTGCAAGACTCATGGACCGATAGCTCTGGCTCAATGGTCGTGTATTCACCAATCGATTCACAATCCTTGGACATCTTGATCAGTGGTGGAGACTCTTCAGTGATTCCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGACGGCCATTCAAACGTCAACAATATCGTTGGAACTTCAAGTGACGGTAGCAGCGGCAATGGCGAGGGCGGAGACAACGGTGGATGCTTGCTGACATTTGGATTACAAATGCTGCTGAACAACACTCCAACAAGTAAGCTCACAATGGAGTCAGTTGAGTCTGTCAATGCACAAATCTCAGTGACCATTCAGAGAATCAAAGAAGCACTTGGAGTTGTTGCATGA 2310 0.4571 MKMVSNLSLITNKKMEGNVGMGLIGENFDSGLLGRLRDDDYESRSGSENFDDLSGDDLDVADDQPKSKKKKKYHRHTPQQIQELETFFKECPHPDEKQRTDLSKKLGLANKQVKFWFQNRRTQMKTQLERHENMILRQENERLRAENSLLKDAMSNPTCSNCGGPAIPGQFSPEDHQLRVENARLKEELGRVSTLTHKFFGRPVSAFGSITMPNPNSGFELGMGRNGVVGPSNFNMSLPMGFGMGDGVMGAPALQSGLQSPMGMIGNTAQQERAMLIDLAQAAMDELISMSQPDSPLWIKSLDGVNEVLNYDEYAKVNSLFNDPKQNGFVTEATRQTGLLLINSAGLVETMLDADQWAEMFPCMIAGASTLDVISSGMNGTRSGSLQVMQAEVQLPSPLVPVRQYSFLRFAKQHVGGIWVVVDVSVNVGRNAANGNPYMSCKKLPSGCILEDLPNGFCKITWVDHSQYDESVVHQAYRPLVNSGMAFGAHRWVATLQRQCDSLAVSMSQSDDPTAMTPHGKKSMLKLAQRMSDYFWSGICPSTACKWDILPISNMGDSDLKIMYRQHPDANSSIVLSAATSVWIPLPRQRVFDFLREAQMRGGWDALSNGGPMQEVVHIAKGQALGNSISILSLNNAVNPNGNEGSNLYLQDSWTDSSGSMVVYSPIDSQSLDILISGGDSSVIPLLPSGFSILPDGHSNVNNIVGTSSDGSSGNGEGGDNGGCLLTFGLQMLLNNTPTSKLTMESVESVNAQISVTIQRIKEALGVVA* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1472 769 SUPERFAMILY Homeodomain-like 58 127 IPR009057 -
Mtr6g1472 769 SMART HOX_1 69 131 IPR001356 GO:0003677
Mtr6g1472 769 Gene3D - 59 143 - -
Mtr6g1472 769 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Mtr6g1472 769 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Mtr6g1472 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 766 IPR042160 -
Mtr6g1472 769 CDD START_ArGLABRA2_like 273 500 - -
Mtr6g1472 769 CDD homeodomain 74 127 IPR001356 GO:0003677
Mtr6g1472 769 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 766 - -
Mtr6g1472 769 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Mtr6g1472 769 SUPERFAMILY Bet v1-like 272 502 - -
Mtr6g1472 769 MobiDBLite consensus disorder prediction 39 78 - -
Mtr6g1472 769 SUPERFAMILY Bet v1-like 546 762 - -
Mtr6g1472 769 Pfam START domain 279 501 IPR002913 GO:0008289
Mtr6g1472 769 ProSiteProfiles START domain profile. 269 505 IPR002913 GO:0008289
Mtr6g1472 769 SMART START_1 278 502 IPR002913 GO:0008289
Mtr6g1472 769 Coils Coil 121 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1472 Mtr-Chr6 24564993 24570202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1472 6 765 Homeobox Transcription Factor Family AT3G61150 48.837 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr6g1472 START 1.3e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1472 K09338 - gmx:100820113 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3783 1 49388050 49393256 Mtr6g1472 6 24564993 24570202 ECH
Mtr5g1209 5 12317226 12324304 Mtr6g1472 6 24564993 24570202 ECH
Mtr6g1472 6 24564993 24570202 Mtr6g1472 6 24564993 24570202 ECH