Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1468 ATGGCTCCGTCGCCAGCTCCGGTGGAAAACAACGGCGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCATTTCTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACGTTTATTGTTTGGAACCCTACCGTCTTTGCTAGTAATTTGCTTCCTAAATATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTTCGTAGAGGAGAAAAACGGCTTCTATGTGAGATTCAAAGGAGGAAGATCTGTTCTCCAACACCTTCACCGTCGTCTGTTTCTGTTTCTGCTTCTACAATAGCAGCAGAAACTACAACAGCGACGGTTGCAGTTCCTTCGCCGATGCCGTTGACAGTAATACCAACGGTGATGCAGATGATTTCACCGTCTAACTCCGGTGAAGAACAGGTGATATCATCGAGTTCTTCTCCAGCACGAGCACCAGCGGAGCTTCTCGACGAAAACGAGAGATTAAGGAAAGAGAACCATTTATTGAATAAAGAGCTTGCTGATATGAGATTGCTTTGTAATAATATATACTCTCTAATGTCAAATTTTGCAAACAATAACAGTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCGAAACCGCCGCTTGATTTGATGCCGGCGGTTGCAAACCGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTAAGAGAAAACGGTTGTGAAAATGGGGAAAAAGAGGATGATACGCTGTTGCGGCTACATCAACCTGGTTCTACGGATGTGAAATCAGAACCGTTGGATTGTTCGGATGGTGGTAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAGTTTGAGTAAATGA 1026 0.4415 MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPSSVSVSASTIAAETTTATVAVPSPMPLTVIPTVMQMISPSNSGEEQVISSSSSPARAPAELLDENERLRKENHLLNKELADMRLLCNNIYSLMSNFANNNSQTDGGAQGSRESGMTAVNPKPPLDLMPAVANRSSGEEMNPKLFGVAIGAKRVRENGCENGEKEDDTLLRLHQPGSTDVKSEPLDCSDGGNDRTAWLNQSRRKNQSLSK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1468 341 MobiDBLite consensus disorder prediction 1 25 - -
Mtr6g1468 341 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Mtr6g1468 341 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 MobiDBLite consensus disorder prediction 324 341 - -
Mtr6g1468 341 MobiDBLite consensus disorder prediction 233 256 - -
Mtr6g1468 341 Gene3D - 26 124 IPR036388 -
Mtr6g1468 341 MobiDBLite consensus disorder prediction 304 341 - -
Mtr6g1468 341 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 326 IPR027725 -
Mtr6g1468 341 MobiDBLite consensus disorder prediction 8 25 - -
Mtr6g1468 341 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1468 341 Coils Coil 197 217 - -
Mtr6g1468 341 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 326 - -
Mtr6g1468 341 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1468 Mtr-Chr6 24321157 24322985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1468 26 339 HSF AT5G62020 47.447 3.19e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr6g1468 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1468 K09419 - gmx:100812267 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1468 6 24321157 24322985 Mtr1g3780 1 49349636 49350971 PCT