Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1462 ATGGATCCTAATGGTTCTGTTGATGATAAGTGTGAAAATAGACTCTGCGTTGGCAATCTTGATCTCAGAATTACAGAAGCTGCTCTGCTCAAAATGTTTTCTCCTTATGGAAAGATCGTGTCCGTGGACTTATTGTGGCACACCCGTGGCCCGAAACGCGGGGAGCCACGCGGTTTCGCTTTCATCCATTACAGCACAAAAGAGGAAGCAATATTGGCCAGGGAGAAAATGCACGGGAGGTTAGCTTGCAGCCGGCCATTGGTTGTTCGCCTTGCGGGTGAGAGGTATGCCCTGGAAAAGGCAGATAGCTCTACAAAAGCAGTAAGTGAAGGGCACAAGTTACATCTCACTGGTGGTGGCATAGGACAGACGAGTCGAAGTGCGAAAATAGCTGCAATAAAGAACAAGTTAAAGTCTTTAGAGGAGGATAATTCTAAGACTAAGAAACAGAAGCTGAGTGACAATATATCTTGA 474 0.4599 MDPNGSVDDKCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEEAILAREKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLTGGGIGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKLSDNIS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1462 157 CDD RRM_RBM18 14 92 IPR039157 -
Mtr6g1462 157 Coils Coil 130 150 - -
Mtr6g1462 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 86 IPR000504 GO:0003723
Mtr6g1462 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 6 152 - -
Mtr6g1462 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 152 - -
Mtr6g1462 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Mtr6g1462 157 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Mtr6g1462 157 Gene3D - 4 129 IPR012677 -
Mtr6g1462 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1462 Mtr-Chr6 24086815 24089722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1462 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 36.145 9.44e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1462 K24527 - gmx:100806572 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1462 6 24086815 24089722 Mtr6g1462 6 24086815 24089722 ECH