Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1461 ATGCAAAAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAACCACTAGATGAAAATGTGTTTTCCATGGATTATGATATTGACTTTGAAACTTCATGGCCTTTGGATCATATATCTAACTCCATGCATCCTTTTTTCTTGCAAAATATCTCTGAACAACCTTTTTCACCTATTTGGACTTTTTCTGATGATGATCACAACATTGCAGCTTCAGGTAACAACAAAAACATAATAACTGAAAACCGAGTCGAAAATGATGACAAGCATAAACGTGTGACACCCCATATAGGTCTACCACCTTTACAAAATCCACATGGTTATTGCCTAATCAAGGAAAGAATGACACAAGCTCTTAGAAACTTCAAAGAGTTAACTGAACTGAATGTTCTTGCTCAAGTTTGGGCGCCCGTGAGGAATGGAAGTCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTCGATGCACATAGTAATGGACTTCATCAGTACAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGACGGAGAAAACGACGAAGTTTTAGGACTTCCTGGAAGAGTTTTTCAGCAGAAGTTACCTGAATGGACTCCTAATGTTCAGTATTATTCTAGTAAAGAGTATTCAAGGCTAAATCATGCTCTACATTATAATGTTCGCGGAACTTTGGCTTTGCCGGTGTTTGAACCTCCAGGACAATCATGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAAGTGGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATATGTAACGAAGATAGACAGAATGCATTATCCGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCATGCAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTAAAGAAAAATTGCTCAAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCAATAACCGAGGTAGCATTCTATATCATAGATTCTCACACATGGGGTTTCCATGATGCATGTGTTGAACATCACTTACAACAAGGTCAAGGAGTTGCCGGAAGAGCTTTTTTGTCTCAAAACATGTGTTTCTGTAGAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACACTATGCTCTCATGTTTGATTTAACAAGCTCTTTTTCAATATGTTTACAAAGTTCTCATACCGGAGGTGATGATTATGTACTAGAGTTTTTTCTTCCTCCTAGTATCAATAAATTTTGTGAACAAAAGGGTTTGTTAGGATCAATATTGGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGCGTTGAACTTGAGGAAGATGGATCAGTTGAAATTGTTGAAATAATAAATGGAACAGTTCATTCGAGGCTTGAATCAGTTCCGATTATTCAATCTACTAAATTATCAGCTAGACATGATGATGCCTCGCCGGATATGGAGGAGGGAGTGCCACTAGATCAATCACGACAGAAAATAATCACAAATTTTGATGACATAAATGATATAGGAAATCTTGATGATTATGCAGGTGGAAGCATTGATCAGATCCATTCCTTGAAGACTGAAACCAAAAAGAAACCGTCGTTGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTCTTGCAAGATTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAGAGCCTTGGAGTTTGTCCAACTACAATGAAGCGAATCTGCAGGCAGCACGGAATATCCCGTTGGCCTTCTCGAAAGATCAAAAAGGTTAACCGTTCGCTGTCCAAGCTCAAATGTGTGATTGAATCGGTCCACGGTGTTGAAGGAGCATTTGGTTTGGATTCTCCAAGTACAAGCACAATCCCTATTGCTGCTGGTTCCTTTAATGAACCTTCTACTTCGAACAAGTTTGAACACCATACCTCATTAAGCATAATGCCATCAGAACCTAAGAAGAACGAAAATTATTTAGATGCATCTAAATCAGAACCTCAAAAACCATTAGGAGGAATGCTAATCGAAGGTGCTGATAGTTCTAAAGACTTGAAAAATCTGTGTCCTTCAACAGATGTTGTTTTGGAGGATCAGGTCCTAGAAGCTTCAAGGATTCATCCTCCATGTTCTGATTTTGTTCATATGCAAATGCAGCACATGGATACTCTTAATTTTGCAGCTCAGAAAGAGATGAAGATTGTGACTATAAAGGCAACATATAGAGATGATATCATAAGGTTTAGGGTTTCTTGGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTGCTAAAAGACTGAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATATTGGTAGCTTGTGATGCAGATTTACAGGAGTGCATGGACATTTTAACATTATCAGGAAGCAACATTATCCGGCTTGTTGTGCATGATATTTTGTCCATTCTTGGAAGCTCGGTTGAGAGCTCAGGGGAATGA 2574 0.3838 MQKSEEENHDLPQKSKPLDENVFSMDYDIDFETSWPLDHISNSMHPFFLQNISEQPFSPIWTFSDDDHNIAASGNNKNIITENRVENDDKHKRVTPHIGLPPLQNPHGYCLIKERMTQALRNFKELTELNVLAQVWAPVRNGSRYKLTTSGQPFVLDAHSNGLHQYRTVSLMYMFSVDGENDEVLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKNCSSFDGYCMGQVCMSITEVAFYIIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCRNITQFCKTDYPLVHYALMFDLTSSFSICLQSSHTGGDDYVLEFFLPPSINKFCEQKGLLGSILATMKQNFQSLKVASGVELEEDGSVEIVEIINGTVHSRLESVPIIQSTKLSARHDDASPDMEEGVPLDQSRQKIITNFDDINDIGNLDDYAGGSIDQIHSLKTETKKKPSLRKRGKAEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLDSPSTSTIPIAAGSFNEPSTSNKFEHHTSLSIMPSEPKKNENYLDASKSEPQKPLGGMLIEGADSSKDLKNLCPSTDVVLEDQVLEASRIHPPCSDFVHMQMQHMDTLNFAAQKEMKIVTIKATYRDDIIRFRVSWNCGIVELREEIAKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTLSGSNIIRLVVHDILSILGSSVESSGE* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1461 857 Gene3D - 759 843 - -
Mtr6g1461 857 ProSiteProfiles PB1 domain profile. 762 844 IPR000270 GO:0005515
Mtr6g1461 857 PANTHER PROTEIN NLP8 693 856 IPR045012 GO:0003700
Mtr6g1461 857 PANTHER PROTEIN NLP8 3 692 IPR045012 GO:0003700
Mtr6g1461 857 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Mtr6g1461 857 CDD PB1_NLP 763 843 IPR034891 -
Mtr6g1461 857 SMART PB1_new 762 844 IPR000270 GO:0005515
Mtr6g1461 857 Pfam RWP-RK domain 573 621 IPR003035 -
Mtr6g1461 857 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 692 - -
Mtr6g1461 857 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 693 856 - -
Mtr6g1461 857 SUPERFAMILY CAD & PB1 domains 760 847 - -
Mtr6g1461 857 Pfam PB1 domain 763 843 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1461 Mtr-Chr6 24065712 24071755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1461 167 857 NLP Transcription Factor Family AT1G64530 55.430 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr6g1461 PB1 2.8e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1461 - - mtr:MTR_0022s0430 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1461 6 24065712 24071755 Mtr1g3742 1 48985267 48990067 PCT