Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1416 ATGTCTGTAACTGCATATGCTGCAAAGTTTGTAGAGCTTGCTAAATTTTATCTGCATTATACCGCTGAGACTGCTGAGTTCTCAAACTGTAGGATTTGCGAGGAGGATACGAAAGCTCAGTATAAGGTTAGGAATGAGCGGAGGAACAAGGGTCAACAGGGTCGACCGAAGCCCTACAGTGCTCCTGTTAACAAAGGAGAGCAAAGACTGAATGATGAAAGGAGACCTAAGAGAGGAGATGTTCCTACTGAGATCGTTTGCTACAAGTGTGGTGAGAAGGGCCACAAGAGTAATGTTTGCAATGGTGATGAGAAAAAGTGCTTCCGATGTGGGAAGAAAGGACATACTATAGCTGAGTGCAGACGCGGAGATATTGTTTGCTACAATTGTGATGAGGAAGGTCATATTAGCTCGCAGTGCAAGAAGCCTAAGAAGGTTCAGGCAAGTGGAAGAGTGTTTGCTTTAGCTGTTACTCAGACAGCGAATGAGGATCGTCTGATCTGA 504 0.4484 MSVTAYAAKFVELAKFYLHYTAETAEFSNCRICEEDTKAQYKVRNERRNKGQQGRPKPYSAPVNKGEQRLNDERRPKRGDVPTEIVCYKCGEKGHKSNVCNGDEKKCFRCGKKGHTIAECRRGDIVCYNCDEEGHISSQCKKPKKVQASGRVFALAVTQTANEDRLI* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1416 167 Gene3D - 36 122 - -
Mtr6g1416 167 ProSiteProfiles Zinc finger CCHC-type profile. 87 100 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 ProSiteProfiles Zinc finger CCHC-type profile. 106 122 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 Gene3D - 123 151 - -
Mtr6g1416 167 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 Pfam Zinc knuckle 86 100 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 Pfam Zinc knuckle 105 121 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Mtr6g1416 167 SUPERFAMILY Retrovirus zinc finger-like domains 105 144 IPR036875 GO:0003676|GO:0008270
Mtr6g1416 167 MobiDBLite consensus disorder prediction 45 78 - -
Mtr6g1416 167 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 28 154 - -
Mtr6g1416 167 PANTHER CELLULAR NUCLEIC ACID-BINDING PROTEIN 28 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1416 Mtr-Chr6 22495127 22495720 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1416 59 149 C2H2 Transcription Factor Family AT5G20220 30.556 9.89e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1416 - K09250 lja:Lj0g3v0032889.1 192.2