Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1397 ATGGCTTTCACTACCTCAATCCTAGCTGAAAAAAAGAACAAGATTTTGTTTATATTGGGTGCAACAGGAACTGGGAAAACTAAACTTTCCATCAACTTGGGTACTCGTTACCCCGCTGAAATCATCAACTCGGACAAAATTCAAGTCTATAAGGGTCTTGATATTGTCACAAATAAGGTGCCGCAATCTGAACGTTGTTCGATTCCGCATCACTTATTAGGCATCATCGATGATCCTGAATATGATTTTACTATGAACGATTTTTGCAAACGTTCTGAATCCATAGATCTCATAATTGGCAATGGACGCCTACCTATTATTGTAGGAGGGTCCAATTCTTATATAAAAAAATTGGTTGAAGAGCCAACCATTGCTTTTCTTTCAAAATATGACTGTTTTTTCATTTGGGTAGATGTGTCTTTGCCTACTCTATTTCAATATGTAGGGAAAAGAGTTGATGAAATGGTTGAGTCAGGGATGGTTGATGAGATTCGAGAATATTATGCACCTGGGGCAGACAACTCAAAGGGAATTAGAAGGGCTATTGGGGTTCCTGAGCTTGATTCTTTTTTTCAAATAGAAAAGAAAAATGACATTGATGATGCTCAAAAGGAAAAGATATTGGCCGAAGCTATCAGAAAAACCAAACAGAACACTTGCATATTGGTTCAAAATCAACTCTTGAAGATCAAGAATATGGCTCAAATCCTTGGGTCGATGGTATACAAGATTGATTCTACGGAAGTCTTTGAGGCCCTTCTGAAGGGAGAAGATTATAAACATTTGCATCAAGAGAATGTAATTAAGCCAAGCATAGAGATAGTGAAAAGATTCCTTGAGGAGACACCTGTTGGATTTGAATATGAAAAATATTCAAATGAAAATGGGAAACATGCACTCAATGGTGTTTCAAACATCCGGGCAAAAATTATATAA 936 0.3686 MAFTTSILAEKKNKILFILGATGTGKTKLSINLGTRYPAEIINSDKIQVYKGLDIVTNKVPQSERCSIPHHLLGIIDDPEYDFTMNDFCKRSESIDLIIGNGRLPIIVGGSNSYIKKLVEEPTIAFLSKYDCFFIWVDVSLPTLFQYVGKRVDEMVESGMVDEIREYYAPGADNSKGIRRAIGVPELDSFFQIEKKNDIDDAQKEKILAEAIRKTKQNTCILVQNQLLKIKNMAQILGSMVYKIDSTEVFEALLKGEDYKHLHQENVIKPSIEIVKRFLEETPVGFEYEKYSNENGKHALNGVSNIRAKII* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1397 311 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 141 241 - -
Mtr6g1397 311 Gene3D - 12 279 IPR027417 -
Mtr6g1397 311 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 1 297 - -
Mtr6g1397 311 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 297 IPR039657 -
Mtr6g1397 311 Pfam IPP transferase 129 227 - -
Mtr6g1397 311 Pfam IPP transferase 48 121 - -
Mtr6g1397 311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 171 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1397 Mtr-Chr6 21690153 21691090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1397 86 285 C2H2 Transcription Factor Family AT2G27760 31.278 2.19e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1397 K10760 - mtr:MTR_6g045307 432.565