Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1396 ATGGCTTTCACTACCTCAATCGTAGCTGAAAAGAAGAACAAGATTTTGTTTATATTGGGTGCAATAGGAACTGGGAAAACTAAACTTTCCATCAACTTGGGTACTCGTTACCCCGCTGAAATCATCAACTCGGACAAAATTCAAGTCTATAAGGGTCTTGATATTGTCACAAATAAGGTGCCGGAATCTGAACGTTGTTCGATTCCGCATCACTTATTAGGCATCATCAATGATCCTGAATATGATTTTACTATGAACGATTTTTGCAAGAACGTGCTTGAATCCATAGATCTCATAATTGGCAATGGACGCCTACCTATTATTGTAGGAGGGTCCAATTCTTATATAAAAAAATTGGTTGAAGAGCCAACCATTGCTTTTCTTTCAAAATATGACTGTTTTTTCATTTGGGTAGATGTGTCTTTGCCTACTCTATTTCAATATGTAGGGAAAAGAGTTGATGAAATGGTTGAGTCAGGGATGGTTGATGAGATTCGAGAATATTATGCACCTGGGGCAGACAACTCAAAGGGAATTAGAAGGGCTATTGGGGTTCCTGAGCTTGATTCTTTTTTTCAAATAGAAAAGAAAAATGACATTGATGATGCTCAAAAGGAAAAGATATTGGCCGAAGCTATCAGAAAAACCAAACAGAACACTTGCATATTGGTTCAAAATCAACTCTTGAAGATCAAGAATATGGCTCAAATCCTTGGGTTGATGGTATACAAGATTGATTCTACGGAAGTCTTTGAGGCCCTTCTGAAGGGAGAAGATTATAAACATTTGCATCAAGAGAATGTAGTTAAGCCAAGCATAGAGATAGTGAAAAGATTCCTAGAGGAGACACCTGTTGGATTTGAATATGAAAAATATTCAAATGAAAATGGGAAACATGCACTCAATGGTGTTTCAAACATTCGGGCAAAAATTATATAA 939 0.3674 MAFTTSIVAEKKNKILFILGAIGTGKTKLSINLGTRYPAEIINSDKIQVYKGLDIVTNKVPESERCSIPHHLLGIINDPEYDFTMNDFCKNVLESIDLIIGNGRLPIIVGGSNSYIKKLVEEPTIAFLSKYDCFFIWVDVSLPTLFQYVGKRVDEMVESGMVDEIREYYAPGADNSKGIRRAIGVPELDSFFQIEKKNDIDDAQKEKILAEAIRKTKQNTCILVQNQLLKIKNMAQILGLMVYKIDSTEVFEALLKGEDYKHLHQENVVKPSIEIVKRFLEETPVGFEYEKYSNENGKHALNGVSNIRAKII* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1396 312 Pfam IPP transferase 48 122 - -
Mtr6g1396 312 Pfam IPP transferase 130 228 - -
Mtr6g1396 312 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 298 IPR039657 -
Mtr6g1396 312 Gene3D - 12 280 IPR027417 -
Mtr6g1396 312 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 142 242 - -
Mtr6g1396 312 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 1 298 - -
Mtr6g1396 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 172 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1396 Mtr-Chr6 21685353 21686291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1396 90 286 C2H2 Transcription Factor Family AT2G27760 31.250 2.42e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1396 K10760 - mtr:MTR_6g045307 439.499