Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1388 ATGGCTTTCACAACCTCAATCCTAGCTGAAATGAAGAACAAGGTTTTGTTTATATTGGGTGCAACAGGAACTATGAAAACTAAACTTTCCATCAACTTGGGTAGTCGTTACCCCGCTGAAATCATCAACTCGGACAAAATTCAAGTTTATAACGGTCTTGATATTGTCACAAATAAGATTGATTCTACCGAAGTCTTTGAGGCCCTTCTGAAGGGAGAAGATTATAAACATTTGCATCAAGAGAAGGTGAAGGTTCCTTTGTCACTTAAGGAGTTTAGGCCGATTTCCTTGTGGGGTAGTTTGTACAAACTCCTTGCTAAGGTGTTGACCGAGAGGTTGTCTAAGATTTCAAATCCAAAAAAACTCATGGCTTTCACTACCTCAATCCTAGCTGAAAAGAAGAACAAGATTTTGTTTATATTGGGTGCAACAGGAACTGGGAAAACTAAACTTTCCATCAACTTGGGTACTCGTTACCCCGCTGAAATCATCAACTCAGACAAAATTCAAGTCTATAAGGGTCTTGATATTGTCACAAATAAGGTGCCGGAATCTGAACGTTGTTCGATTCCGCATCACTTATTAGGCATCATCGATGATCCTGAATATGATTTTACTATGAACGATTTTTGCAAGAACGTGCTTGAATCCATAGATCTCATAATTGGCAATGGACGCCTACCTATTATTGTAGGAGGGTCCAATTCTTATATAAAAAAATTGGTTGAAGAGCCAACCATTGCTTTTCTTTCAAAATATGACTTTTTCATTTGGGTAGATGTGTCTTTGCCTACTCTATTTCAATATGTAGGGAAAAGAGTTGACGAAATGGTTGAGTCAGGGATGGTTGATGAGATTCGAGAATATTATGCACCTGGGGCAGACAACTCAAAGGGAATTAGAAGGGCTATTGGGGTTCCTGAGCTTGATTCTTTTTTTCAAATAGAAAAGAAAAATGACATTGATGATGCTCAAAAGGAAAAGATACTGGCCGAAGCTATCAGAAAAACCAAACAGAACACTTGCATATTGGTTCAAAATCAACTCTTGAAGATCAAGAATATGGCTCAAATCCTTGGGTCGATGGTATACAAGATTGATTCTACGGAAGTCTTTGAGGCCCTTCTGAAGGGAAAAGATCATAAACATTTGCAACAAGAGAATGTAGTTAAGCCAAGCATAGAGATAGTGAAAAGATTCCTAGAGGAGACACCTGTTGGATTTGAATATGAAAAATATTCAAATGAAAATGGGAAACATGCACTCAATGGTGTTTCAAACATTCGGGCAAAAATTATATAA 1302 0.3771 MAFTTSILAEMKNKVLFILGATGTMKTKLSINLGSRYPAEIINSDKIQVYNGLDIVTNKIDSTEVFEALLKGEDYKHLHQEKVKVPLSLKEFRPISLWGSLYKLLAKVLTERLSKISNPKKLMAFTTSILAEKKNKILFILGATGTGKTKLSINLGTRYPAEIINSDKIQVYKGLDIVTNKVPESERCSIPHHLLGIIDDPEYDFTMNDFCKNVLESIDLIIGNGRLPIIVGGSNSYIKKLVEEPTIAFLSKYDFFIWVDVSLPTLFQYVGKRVDEMVESGMVDEIREYYAPGADNSKGIRRAIGVPELDSFFQIEKKNDIDDAQKEKILAEAIRKTKQNTCILVQNQLLKIKNMAQILGSMVYKIDSTEVFEALLKGKDHKHLQQENVVKPSIEIVKRFLEETPVGFEYEKYSNENGKHALNGVSNIRAKII* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1388 433 Pfam IPP transferase 170 244 - -
Mtr6g1388 433 Pfam IPP transferase 255 349 - -
Mtr6g1388 433 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 123 419 IPR039657 -
Mtr6g1388 433 Gene3D - 134 401 IPR027417 -
Mtr6g1388 433 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 263 363 - -
Mtr6g1388 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 293 IPR027417 -
Mtr6g1388 433 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 60 IPR039657 -
Mtr6g1388 433 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 1 60 - -
Mtr6g1388 433 Gene3D - 11 95 IPR027417 -
Mtr6g1388 433 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 123 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1388 Mtr-Chr6 21646566 21650087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1388 18 407 C2H2 Transcription Factor Family AT2G27760 27.512 1.90e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1388 K10760 - mtr:MTR_6g045307 433.335