Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1385 ATGGCTCTTTCAACTGAGATGGAGGCACTTCCCCAACAATTCTTAGAGGGTCCAAGGGTTCTTGTGATTGATCATGATACCACTATCCATAATGTCATTGTTGAAAAGTCAATTGGTTGGGATTTCAAAGTTACCACATGCTCTAATGCTTCTTTTGCATTGACTCTTTTGAGGGAAGCAAAGGGTTGTTTTGATGTGATACTAATTGAAGAACAAATTTCAGACATGAATTCCTATGATTTTCTCCAACAAATTACCCAACAAATCAATATTCCTGTCATTATGATGGGTAAAGATGGATCAACAAGTGCAGCTATGAAGGCTATTGCAAACGGGGCTTGTGAGTATTGTGTTAAGCCTTTGAGTGATGATGACCTAATTAAAAACATTTGCCAACATGTTTCAAGGAAATCTTTGAATGAAAATAAACATGATCAAATTCATGTTGATAATGGCACAAAAGAAACTCATGTTGATGTGGTTGAAAAGGATAATTATCAACCCCCAACAAAAAAGAACCGTTTAAAATGGTCTCAAGCAATGCAACAAGAATTTCTAAGGGCTGTGAATCAGTTTGGCCTTGATAATGCAAAGCCAAAAAAAATTATTGAAGTGATGAATGTTCCTGGTTTGACAAAAGAGCATATTGCTAGCCATTTACAGAAATTGAGAATTGCTTTGAAGAATGAAATGCCAAAAGGTAAGTGGAAAAAATCAAAGCAAGATCAATGTCATCATCCTACTGAAACACAGTTAGGTCTTGAAGCTGCTAAGTCAACGCCAGAACTTGATCAAAATGTTAAAAATTCAGTCATACAATGTGACAATAATTCCCATGCACCACAACATTCATCGATATTTGCAAATCTTTTTACTGATCAGTCTGATGTTCAGAGTTCAGTCATACAATGTGACAATAATTCCCATGCACCACAACATTCATCGATATTTGCAAATCTTTTTACTGATCAGTCTGATGTTCAGAGTTCAGTCATACAATGTGACAATAATTCTTATACACCACAACATTCACAGACATTTGCCAACATTTTTACTCATCAATCTAATGTTCAGAATTTTGTTATACAATGTGACAATAATTCTCATGCACCACAACATTCACCGCCATTTGCCAACATCTTTACTGCTCAGTCTAGTGTTCTAAATTCTTATGCACCACAACATTCATCGACATTCGGCAACATTTTCACTTATCAGTCCAACATGAATCCATATGATGAGTTCTTTAATTGA 1254 0.3541 MALSTEMEALPQQFLEGPRVLVIDHDTTIHNVIVEKSIGWDFKVTTCSNASFALTLLREAKGCFDVILIEEQISDMNSYDFLQQITQQINIPVIMMGKDGSTSAAMKAIANGACEYCVKPLSDDDLIKNICQHVSRKSLNENKHDQIHVDNGTKETHVDVVEKDNYQPPTKKNRLKWSQAMQQEFLRAVNQFGLDNAKPKKIIEVMNVPGLTKEHIASHLQKLRIALKNEMPKGKWKKSKQDQCHHPTETQLGLEAAKSTPELDQNVKNSVIQCDNNSHAPQHSSIFANLFTDQSDVQSSVIQCDNNSHAPQHSSIFANLFTDQSDVQSSVIQCDNNSYTPQHSQTFANIFTHQSNVQNFVIQCDNNSHAPQHSPPFANIFTAQSSVLNSYAPQHSSTFGNIFTYQSNMNPYDEFFN* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1385 417 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 172 225 IPR006447 GO:0003677
Mtr6g1385 417 SUPERFAMILY Homeodomain-like 170 229 IPR009057 -
Mtr6g1385 417 SMART REC_2 18 130 IPR001789 GO:0000160
Mtr6g1385 417 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 14 342 - -
Mtr6g1385 417 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Mtr6g1385 417 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 342 IPR045279 GO:0009736
Mtr6g1385 417 SUPERFAMILY CheY-like 16 144 IPR011006 -
Mtr6g1385 417 CDD REC_typeB_ARR-like 20 134 - -
Mtr6g1385 417 Gene3D - 11 143 - -
Mtr6g1385 417 Pfam Response regulator receiver domain 20 130 IPR001789 GO:0000160
Mtr6g1385 417 Gene3D - 169 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1385 Mtr-Chr6 21611103 21613250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1385 1 228 Response Regulator Gene Family AT4G31920 36.515 6.46e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr6g1385 Response_reg 5.8e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1385 - K14491 mtr:MTR_6g045327 776.933