Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1377 ATGGGATTCCAGCTAGCAGAAAAAGTACAAAAATCAAAATACAGAAAGGGATTATGGTCACCTGAAGAAGATAACAAGCTTAGTAATTATATAATGAAGCATGGTCATAGCTGCTGGAGCTCTGTCCCCATTAAAGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTACCTGAGGCCTGGATTAAAGAGAGGTATGCTCAGCAAACATGAGGAAGATAAAATCATGACCCTTCACCAAATGTTAGGCAACAAGTGGTCTCAGATTGCACAACAATTGCCGGGAAGGACCGACAACGAGATTAAAAATTATTGGCATTCATATCTGAAAAAGAAAGAAGTCAAAAGTAAGGATATTGAATCTCATACTCAAATTCAATATGCTAGTTCAAGCTCAGATACAATGAACTCCTTACTCTCAACTCAAAAATATGCAATTCAAGATCCAAAATATGTGTTACCAGAAAACATTAACAAATCAACAGCTACAACACACTCTGATCAATCTATTTCAAAGAATTATAACACTGCCAATGAAGTTTGTCACAGTTCATTACCAAAACTTTTATTTTCTGAGTGGCTTTCACTAGATCAAGTAAATGGTTGCAACTCTCTAAATTCAGATGATTCTTTGGTCTTGAAAAATGGCTATGATCAAAATTTAATTTTTCAAGAAAATGTTATTCAAATGCCAGAAGGGCAGTTTGGTGAAGAGTTTCATGATAGTCTAATTCAAAATCTAGAAAATGATGTTTACTATTCACAGATTCAAATGTCAAATCAAGTGGATGAAAATGAATTGGTCCACTATCTGAACAATGATGTAATGTATGTATGA 852 0.3474 MGFQLAEKVQKSKYRKGLWSPEEDNKLSNYIMKHGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMLSKHEEDKIMTLHQMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKEVKSKDIESHTQIQYASSSSDTMNSLLSTQKYAIQDPKYVLPENINKSTATTHSDQSISKNYNTANEVCHSSLPKLLFSEWLSLDQVNGCNSLNSDDSLVLKNGYDQNLIFQENVIQMPEGQFGEEFHDSLIQNLENDVYYSQIQMSNQVDENELVHYLNNDVMYV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1377 283 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mtr6g1377 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mtr6g1377 283 CDD SANT 73 114 IPR001005 -
Mtr6g1377 283 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mtr6g1377 283 Gene3D - 16 68 - -
Mtr6g1377 283 PANTHER MYB TRANSCRIPTION FACTOR 1 277 - -
Mtr6g1377 283 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Mtr6g1377 283 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mtr6g1377 283 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Mtr6g1377 283 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mtr6g1377 283 CDD SANT 19 63 IPR001005 -
Mtr6g1377 283 Gene3D - 72 133 - -
Mtr6g1377 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mtr6g1377 283 SMART sant 15 65 IPR001005 -
Mtr6g1377 283 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1377 Mtr-Chr6 21470968 21474595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1377 11 200 MYB Transcription Factor Family AT5G52260 54.974 1.35e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g1377 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1377 K09422 - gmx:100803537 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1377 6 21470968 21474595 Mtr6g1377 6 21470968 21474595 ECH