Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1333 ATGGCTTCCGATCTTGAAGAGAAAGCCAAAGAAGCCTTTGTTGAAGATCACTTTGAGTTGGCTGTTGAACTTCTCTCTCAAGCCATTACTCTTGACCCTCTTAAACCTGAATTCTACGCTGATCGTGCTCAAGCCCATATCAAACTCAACAACTTCACTGATGCTGTTGCTGATGCAAACAAAGCAATTGAGTTGAATCCTTCTCTATCAAAGGCATATTTGCGCAAAGGCAATGCATGCATGAAGCTTGAGGAATATCAGACTGCCAAGACTGCTTTAGAGACGGGTGCCTCATTGGCTGCAGACAAATCAAGATTTGTTAAGTTGATCGAAGAATGTGACGAACTCATTGCAGAAGAATCTGATACCATACCTACACAGGAAAAGTCCACAACACAGGATCCGACTTCAAAAGATGTTCAGCCAGAAGATCTTTCAGAGGAGCCGATAGTGGTGGTTGCTAAGCCTAAATATAGGCATGAGTTTTACCAGAAACCTGAAGAAGTGGTTGTAACCATATTTGCAAAGGGGGTCTCAAAGGAAAGCATTACTGTTGACTTTGGTGAACAAATTCTAAGTGTCAACATTGATGTCCCTGGAGAAGATGCATACGTTTTTCAAAATCGCTTGTTTGGAAAGATCGTACCTTCCAGATGCCGGTATGAAGTCTTGACCACCAAAATTGAAATTCGTCTTGCTAAAGCTGAATCTATTCCCTGGAAGACCCTAGAATTCAACAAAGAGACCACAATTGCACCCAAGGCAATTGCTTCAGTTACTGCCACTCAAAGACCCACTTACCCGTCCTCAAAACCAAAAAGAACAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAGAAAGATGAAAACCTTGATGGCGATGCTGCCCTGAACAAATTTTTCCGTGAAATTTATCAAGATGCTGATGAGGATACAAGAAGAGCCATGAAAAAGTCATTTGTGGAGTCGAATGGAACAGTGCTGTCTACAAACTGGAAGGAAGTGGGAACAAAGAAGGTGGAAGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1074 0.4209 MASDLEEKAKEAFVEDHFELAVELLSQAITLDPLKPEFYADRAQAHIKLNNFTDAVADANKAIELNPSLSKAYLRKGNACMKLEEYQTAKTALETGASLAADKSRFVKLIEECDELIAEESDTIPTQEKSTTQDPTSKDVQPEDLSEEPIVVVAKPKYRHEFYQKPEEVVVTIFAKGVSKESITVDFGEQILSVNIDVPGEDAYVFQNRLFGKIVPSRCRYEVLTTKIEIRLAKAESIPWKTLEFNKETTIAPKAIASVTATQRPTYPSSKPKRTDWDKLEAQVKKEEKDENLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1333 357 Gene3D - 151 261 IPR008978 -
Mtr6g1333 357 Pfam Tetratricopeptide repeat 36 68 IPR013105 -
Mtr6g1333 357 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Mtr6g1333 357 SMART tpr_5 70 103 IPR019734 GO:0005515
Mtr6g1333 357 SMART tpr_5 36 69 IPR019734 GO:0005515
Mtr6g1333 357 SMART tpr_5 2 35 IPR019734 GO:0005515
Mtr6g1333 357 MobiDBLite consensus disorder prediction 123 139 - -
Mtr6g1333 357 CDD p23_CS_SGT1_like 161 244 - -
Mtr6g1333 357 Pfam SGS domain 276 355 IPR007699 -
Mtr6g1333 357 Pfam CS domain 159 234 IPR007052 -
Mtr6g1333 357 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Mtr6g1333 357 PANTHER PROTEIN SGT1 HOMOLOG 1 357 IPR044563 GO:0051087
Mtr6g1333 357 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Mtr6g1333 357 ProSiteProfiles CS domain profile. 155 244 IPR007052 -
Mtr6g1333 357 MobiDBLite consensus disorder prediction 120 145 - -
Mtr6g1333 357 ProSiteProfiles SGS domain profile. 266 357 IPR007699 -
Mtr6g1333 357 SUPERFAMILY HSP20-like chaperones 152 250 IPR008978 -
Mtr6g1333 357 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Mtr6g1333 357 PANTHER PROTEIN SGT1 HOMOLOG A 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1333 Mtr-Chr6 20170847 20176532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1333 1 112 U-box Gene Family AT3G07370 27.679 7.96e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1333 K12795 - gmx:100194421 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1333 6 20170847 20176532 Mtr6g1333 6 20170847 20176532 ECH