Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1317 ATGGATAAGTCTATACATAATTTGGATGATGTTGTTCCTGGTAGAAACGCTGATGCCTGGAGATTTGTTGTTCGAGTTATTAGGTTGTGGGAAGTTCCATTGTTTACCTCTATTGAAATGGTGCTTATTGATCAAAACGGGGTGAAAATACATGCTACTATTCCCAAGCAGTTGATGTATCTTTTTCAGCACAAATTGATTGAGGGAAAAGTTTACAAGTTATCAAACTTTACTGTCTTGCTAAACTCTGGTGCTTATAGGACTACGCATCATACATACAAACTAATATTCCAAATGAAAACTAAGGTGGAGGAGTCCCATGATTATGAAATCTCATTGATTCCAAACCATGGATTAACTCTCACTGACATTTCTCAGATAACCAGCCGTACCCAAGACTATGAATATTTAGTTGATGTAATTGGCTTAATGACTGGTATTTCTGCTGAGAGGGAGTTTGTTAGGGACGGAAAACTGACAAAGATTCTTGTGATTGAGTTAACTGATCACAGTGGTAAATGTGAGTGTACTTTATTTGGCAATTATGTTGATGAGTTGCATAAACTGATGAGTAAAGCTGTTGAAGGATCCCCTGTAATCGTTATTCAGTTTGCTAAGGTTAAGATATTTAGGGGCAAAGCCTCAATTCAGAATGTCGTAGGGAGTACGACGAGAATTTATTTGAATCCAAGTTTCCCGGAGGCACTGAAGTTTAAAGAAGGGAAGGAAGTCTGGTTTACGTTTTCGAAACAGAATGAAGCAATAAAGTTTGCCAAAGGACAAGAAGATGTTCATCTCTTTTGTTATCAAGATCACTTGAATGGATATAGAAGGTTCCTTGTGACTACATATACAGAATTCTGGCAAAGGTACAAAACCATGGATTCCAAAACCCGTCATTTTTATGAAGTGATTCAAGAGGGTTTACCGTGCCACCTTTATTTTGATTTGGAGTTTAATAGAAAAGTCAACGTAGGAAAGAATGGAGACGAAATGGTTAATCTTTTGATATCAACAGTTCTAGAAGCCTTGCATGAAAAGTATGAAATCCTTGGAGACCAGGATTGGATAGTCGAACTTGATTCTTCAACTGAAGATAAGTTCTCTCGTCATCTAATAATTCGCATACCGAAGGCTGCTTTCAAGGATAACTCCCATGCAGGTGCTTTTGTTTCAGAAATATGCTCAAGAATTCTAAACGCAAGGGGGAAAGATAAAAGCTATGAAAAATTGTTTATTGCAAAAGATTCAATTACCAATGAATCGGTTGGACAACTTTTTGTTGATAATGCTGTATATTCTCGGAATCGTTGTTTCCGTCTTCATCTATCTTCAAAGGCAGAAAAAACATCAATTCTTTTGCCGACGGAGAGATTTAAGTGCAAGAACTTGGGACAGAGTGAAGAAGACATATTCATGGCTTCCTTGATATGCAATATGGATGTTGATTGCGGGGAGCTTTTAGTCGGCAAACCAGACTCAGATTGCGTGAAGACTCAGCATTTTGATACAAAGTTGAACTGTAACGTTGGAAACTCTGTCCAAAGTCATCCAGAATTTACATTAAATACTTGCACAAGTGATGTTTCAACAACATACTACAAGGGAAAGTCACCATTCCCATCTCTAGACGAATTTATATTATCCGTTGCCTCTATGGGAAATATACCAGGAAAAATTCACAGCTGGTATTTATACTCTGAATCTGGATTCATGGTCTACAACATGACAAAAAATAGATACTGCGAGCGAATTGGAAGACATCATAAAAGCAATAATGTGATGTACGTTGTTGATCTAAGAAGGGAAGTTTATTATCAGAAATGTCATGATCCTGACTGCAAAGGTTACCGATCTTCCTCACGACCAATTCCAGTTCATGTGTTCTCCAATTCTTCAGTTGTTATTGGTTCATCTGGAATGTTAGATTATAAACAGCCAGTAGAAGATGAGCAGGGACATCAACCTGATGATAACAAGCCGAATTCAGAATGTTAG 1998 0.3749 MDKSIHNLDDVVPGRNADAWRFVVRVIRLWEVPLFTSIEMVLIDQNGVKIHATIPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKTKVEESHDYEISLIPNHGLTLTDISQITSRTQDYEYLVDVIGLMTGISAEREFVRDGKLTKILVIELTDHSGKCECTLFGNYVDELHKLMSKAVEGSPVIVIQFAKVKIFRGKASIQNVVGSTTRIYLNPSFPEALKFKEGKEVWFTFSKQNEAIKFAKGQEDVHLFCYQDHLNGYRRFLVTTYTEFWQRYKTMDSKTRHFYEVIQEGLPCHLYFDLEFNRKVNVGKNGDEMVNLLISTVLEALHEKYEILGDQDWIVELDSSTEDKFSRHLIIRIPKAAFKDNSHAGAFVSEICSRILNARGKDKSYEKLFIAKDSITNESVGQLFVDNAVYSRNRCFRLHLSSKAEKTSILLPTERFKCKNLGQSEEDIFMASLICNMDVDCGELLVGKPDSDCVKTQHFDTKLNCNVGNSVQSHPEFTLNTCTSDVSTTYYKGKSPFPSLDEFILSVASMGNIPGKIHSWYLYSESGFMVYNMTKNRYCERIGRHHKSNNVMYVVDLRREVYYQKCHDPDCKGYRSSSRPIPVHVFSNSSVVIGSSGMLDYKQPVEDEQGHQPDDNKPNSEC* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1317 665 SUPERFAMILY Nucleic acid-binding proteins 4 109 IPR012340 -
Mtr6g1317 665 Pfam Herpesviridae UL52/UL70 DNA primase 568 626 - -
Mtr6g1317 665 Gene3D - 4 109 IPR012340 -
Mtr6g1317 665 SUPERFAMILY Nucleic acid-binding proteins 120 241 IPR012340 -
Mtr6g1317 665 CDD RPA1_DBD_A_like 24 103 - -
Mtr6g1317 665 Pfam Domain of unknown function DUF223 39 110 IPR003871 -
Mtr6g1317 665 MobiDBLite consensus disorder prediction 645 665 - -
Mtr6g1317 665 CDD RPA1_DBD_B_like 139 239 - -
Mtr6g1317 665 Gene3D - 114 249 IPR012340 -
Mtr6g1317 665 MobiDBLite consensus disorder prediction 647 665 - -
Mtr6g1317 665 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 211 659 IPR044917 GO:0003887|GO:0003896|GO:0042276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1317 Mtr-Chr6 19765493 19771227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1317 42 254 Core DNA Replication Machinery Family AT2G06510 27.854 3.31e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1317 K22761 - gmx:100789800 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1317 6 19765493 19771227 Mtr6g1317 6 19765493 19771227 ECH