Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1310 ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACGAGAGAGCTTGCTGAAGATGGCTATGCCGGTGTTGAGGTTAGGGTTACTCCCATGCGCACTGAAATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTCGGTGAGAAGGGAAGGAGGATCAGAGAGCTTACCTCAGTAGTCCAGAAAAGGTTTAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTTAACAACAGGGGACTCTGTGCCATTGCCCAGGCCGAATCTCTTCGTTACAAGCTTCTCGGCGGTCTTGCTGTTCGCAGAGCCTGCTATGGTGTCTTGAGGTTTGTTATGGAAAGTGGTGCTAAGGGTTGTGAGGTTATTGTCAGTGGAAAATTAAGGGCCCAGAGAGCTAAGTCCATGAAGTTTAAGCAAAACTATATGATTTCATCTGGACAACCTGTTAAGGATTACGTTGACTCTGCTGTTAGACATGTTCTTCTTAGACAGGGTGTTCTTGGAATTAAGGTGAAGATTATGCTTGACTGGGATCCTAAAGGAAAGCAAGGTCCTAAAACTCCTCTACCTGATATTGTTACAATTCACACTCCAAAGGATGAGGAAGAGTACACCAGGCCTGCTGCTGTTGTTGCTCCTCTACCTGTCCCAATCGCTGTTTAA 708 0.4562 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVAPLPVPIAV* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1310 235 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Mtr6g1310 235 CDD 40S_S3_KH 15 95 - -
Mtr6g1310 235 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Mtr6g1310 235 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Mtr6g1310 235 Gene3D - 93 219 IPR036419 -
Mtr6g1310 235 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Mtr6g1310 235 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Mtr6g1310 235 Pfam KH domain 20 93 IPR004044 GO:0003723
Mtr6g1310 235 Gene3D - 1 91 IPR015946 -
Mtr6g1310 235 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 224 - -
Mtr6g1310 235 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1310 Mtr-Chr6 19665840 19666904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1310 1 229 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 87.336 4.35e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1310 K02985 - gmx:100808705 424.861