Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1283 ATGGTATCCAAAAACCCGAACCCGCCAGAAGGTTTCTGCCTGGATCCGACCAGCATGGCTCTACCGGGTTTCGGCCCCTTCGCCGCCGTGAACTCGTCGGAAGACGCCTCAAAGAAGATCAGGAAGCCGTACACGATAACCAAGTCTAGAGAAAATTGGACTGAACCTGAACATGACAAGTTTCTTGAAGCTCTTCAATTGTTTGACCGTGATTGGAAAAAGATTGAAGCATTTGTTGGATCGAAGACTGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAAGTTCAGAAGAGTGGAGCCAATGAACATCTTCCTCCGCCCAGACCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAGTGCTCCTGTACTCGGACAATTACCAGGATCTTTTCAATCTTCACCGGCTTTGCTTGAACCTGGATATATAATGAAAAATGAATCCATACCAATGCTTGAAACTCCTATTATGAACACTGTTGTGTCATCCTGGTCAAACCACACGTTGCAAAACACCAATTTGTTACATGTGCCAAAGGTGAATAATTCTTGCAGTAGCACTGAAAGTACTCCAAAAGTGCGGCCGGTTGGTGAATCTAATAATCAAGTGAATAAAAGCCTTCCTTTGAGAGTTCTTCCAGATTTTTCTCAAGTATACAACTTCATTGGCAGTGTATTTGACCCAGAAGCATCTGAGCATTTGCAGAAACTCAAACAGATGGACCGTATAGATGTTGAGACGGTGCTTCTGTTGATGAGAAACCTGTCCATCAATTTAACTAGCCCCGATTTTGAGGATCACAAAAAGCTGCTTTCATCCTATGAAGTTGATCTAGAGACAAACAGCTATCTCAATCCAGATAGACCGATACACGACGAGCCATTGAAGAGTGCTACCACTTAA 924 0.4286 MVSKNPNPPEGFCLDPTSMALPGFGPFAAVNSSEDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLGQLPGSFQSSPALLEPGYIMKNESIPMLETPIMNTVVSSWSNHTLQNTNLLHVPKVNNSCSSTESTPKVRPVGESNNQVNKSLPLRVLPDFSQVYNFIGSVFDPEASEHLQKLKQMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDLETNSYLNPDRPIHDEPLKSATT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1283 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Mtr6g1283 307 CDD SANT 52 95 IPR001005 -
Mtr6g1283 307 Pfam Myb-like DNA-binding domain 50 95 IPR001005 -
Mtr6g1283 307 ProSiteProfiles SANT domain profile. 48 99 IPR017884 -
Mtr6g1283 307 MobiDBLite consensus disorder prediction 100 134 - -
Mtr6g1283 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 97 IPR006447 GO:0003677
Mtr6g1283 307 SMART sant 49 97 IPR001005 -
Mtr6g1283 307 MobiDBLite consensus disorder prediction 187 208 - -
Mtr6g1283 307 Gene3D - 52 100 - -
Mtr6g1283 307 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Mtr6g1283 307 PANTHER PROTEIN REVEILLE 6 20 289 - -
Mtr6g1283 307 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Mtr6g1283 307 PANTHER SWI/SNF COMPLEX-RELATED 20 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1283 Mtr-Chr6 19131139 19138970 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr6g1283 Myb_DNA-binding 4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1283 - - gmx:778054 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1283 6 19131139 19138970 Mtr6g1283 6 19131139 19138970 ECH