Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1245 ATGGATCTTAATGGTTCTGTTGATGATAAGTGTGAAAATAGACTCTACGTTGGCAATCTTGATCTCAGAATTACAGAAGCTACTCTGCTCAAAATGTTTTCTCCTTATGGAAAGATCATGTCCGAGGACTTCTTGTGGCACACCCGTGGCCCAAAACGTGGGGAGCCACGCGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAGGTTAGCTTGCAGCCGGCCATTGGTTGTTCGTCTTGCGGGTGAGAGGTACGCCCTGGAAAAGGCAGATAGCTCTACAAAAGCAGTAAGTGAAGGGCACAAGTTACATCTCACTGGTGGTGGCATAGGACAGACGAGTCGAAGTGCAAAAATAGCTGCAATAAAGAACAAGTTGAAGTCTTTAGAGGAGGATAACTCTAAGACTAAGAAACAGAAGCTGAGTGACAATGTATCTTGA 474 0.4473 MDLNGSVDDKCENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAILAKEKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLTGGGIGQTSRSAKIAAIKNKLKSLEEDNSKTKKQKLSDNVS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1245 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 86 IPR000504 GO:0003723
Mtr6g1245 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Mtr6g1245 157 Gene3D - 10 114 IPR012677 -
Mtr6g1245 157 CDD RRM_RBM18 14 92 IPR039157 -
Mtr6g1245 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Mtr6g1245 157 Coils Coil 130 150 - -
Mtr6g1245 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 152 - -
Mtr6g1245 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 8 152 - -
Mtr6g1245 157 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1245 Mtr-Chr6 17927265 17930224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1245 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 37.349 2.11e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1245 K24527 - gmx:100806572 256.914