Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1238 ATGTCATCGCCGGGTTTCAATGCCGGCGGTGGTGCTGGCTCGTCGGAGTTTTTCTCCGGCAGATCACAAAATACCATCAACAATCTTATCACCACCACCAACCACCATCTTCTTCCTTCTCTTTACCGTACCCAACAACAACCACTTCCTCCAATTTTTCTAGATCCTTCTTCACAGATCCAACAAAATCGCTTCATCGGAAAACGTACTTTAGCTGAATTTCAAACCCAACAACAAAATCACAGTTTCAACAACCTTAACCTTGTCAACAACACCAACAACAACGTTAATTTCAACAACAGTCATGTTCTGTCCAATCTTTTACTTCGTTCTGTTAAACCAAGAACAACAACAACAACATCATCAACAAATTTTCAGTTTCATGCTAATAATAATAATACCCATAATACCCCTTTATCGTTCTCACTACCTGAATTACAACAATACCCTTACCACCAAACACAACGTTTAGGTGTTCCTCTTCTTCATCAATCTACAATCAACCCAAATTTTCATCATTACAGAAACTCCAACTCTAAGCTAGGTCAAATAACAAACTCTATTCAAACGGTTCAAACTATACCCGTGTCCGGCAAAGTAGAAGAAAACAACAACAACAACAACGATCACACTCTTTTACAGGAGTTGGAGAAGCAGCTTCTTGAAGATAACGACGAAGAAGGTGAAACGGAAACAGCTTCTGTTATTACAACAAGTGAATGGTCAGAGACTTATCAGAATCTAATTGGGCCTGGGCTTGGGCCTGGGCCTGGTCAGGCTCAAGCACAGGCACAGAAACTGGTGTCTTCATCACCAACTTCATCAACTACGTCATCAACATCTTCATCAGCGGCTTCACCTGCTTCAGTTTGTTCAAAACAAACATTGATTGAAGCTGCGAATGCGATTTCTGAAGGTAAGAATGATGTTGCTTTAGAGATCTTAAACCGTTTGGTTCAGAATTTGAATCTGAATTCGATGAATTCGGATCAAAGGTTAGCGAATTTCATGGTGAGAGCGTTGAAATCGAGGATGAATCCGGTTGAAAATCCACCTGTTGTTGCGGAATTGTTTGGGAGAGAACATGCTGAGTCGACTCAGTTGTTGCTGGAAAACTCGGTTTGTTTCAAGGTTGGTTTCATGGCAGCAAATCTCGCAATTCTTGAAGCTGCATTTGAAGAAAACGGTAACAGTTTCTGTGTAGTTGATTTTGAAATTGGACAGGGAAAACAGTATGTGAATCTTCTTCACGCGCTCAAAGCGCGTGAAACGGCGCGTGATGGGTTTAAGTTGAAGGTTATTGCGGTGGCTGAGAACGGCGGTGATGATAGAGTGATAGCGGTGGGTGAGATGTTGAGACTTCAAGCGGAGAAGCTAAGAATTGGTTTCGAGTTTCGTGTTGTTTCGGTGTCTCAGAGACAAGTCTACGAGTTAACTCGCGAGTTATTGGGATGTGATGTTGAAGAGACAGTAATTGTGAATTTCGCGTATAAGCTGAATAGAATTCCTGATGAAAGTGTGTCAACGGAGAATCCACGTGACACGCTTTTGCGGCGCGTGAAAACTCTCGCGCCGCGTGTTGTTGTTATTGTGGAGCAAGAAATGAATTGTAATACCGCGCCGTTTTTGGCGCGTGTTGCTGAGTCTTGGGGTTATTATTCCGCTTTATGTGACTCGGTCGAGGAAAATTCCGACCGAGTCAAGATTGAAGAAGGAGTGAGTCGAAAATTGTGTAATTTAGTGGCTTGTGAAGGTAGGGATCGTGTTGAAAGGTGTGAGGTTTTTGGCAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTAAGATGAAACCAATGAGTCAAAATGTTGCCGAGTTGATTAAATCGCGACTCAATATTGGTAACAACGAGTCGCGAGTTAACTCGGGACTCAGTGTGAAAGAAGAGAATGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACGGTTGCTTCTGCTTGGCGTTAA 1989 0.4289 MSSPGFNAGGGAGSSEFFSGRSQNTINNLITTTNHHLLPSLYRTQQQPLPPIFLDPSSQIQQNRFIGKRTLAEFQTQQQNHSFNNLNLVNNTNNNVNFNNSHVLSNLLLRSVKPRTTTTTSSTNFQFHANNNNTHNTPLSFSLPELQQYPYHQTQRLGVPLLHQSTINPNFHHYRNSNSKLGQITNSIQTVQTIPVSGKVEENNNNNNDHTLLQELEKQLLEDNDEEGETETASVITTSEWSETYQNLIGPGLGPGPGQAQAQAQKLVSSSPTSSTTSSTSSSAASPASVCSKQTLIEAANAISEGKNDVALEILNRLVQNLNLNSMNSDQRLANFMVRALKSRMNPVENPPVVAELFGREHAESTQLLLENSVCFKVGFMAANLAILEAAFEENGNSFCVVDFEIGQGKQYVNLLHALKARETARDGFKLKVIAVAENGGDDRVIAVGEMLRLQAEKLRIGFEFRVVSVSQRQVYELTRELLGCDVEETVIVNFAYKLNRIPDESVSTENPRDTLLRRVKTLAPRVVVIVEQEMNCNTAPFLARVAESWGYYSALCDSVEENSDRVKIEEGVSRKLCNLVACEGRDRVERCEVFGKWRARMSMAGFKMKPMSQNVAELIKSRLNIGNNESRVNSGLSVKEENGGICFGWMGRTLTVASAWR* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1238 662 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 661 IPR005202 -
Mtr6g1238 662 PANTHER SCARECROW-LIKE PROTEIN 8 60 661 IPR030013 -
Mtr6g1238 662 MobiDBLite consensus disorder prediction 246 287 - -
Mtr6g1238 662 Pfam GRAS domain family 293 662 IPR005202 -
Mtr6g1238 662 MobiDBLite consensus disorder prediction 262 287 - -
Mtr6g1238 662 ProSiteProfiles GRAS family profile. 283 662 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1238 Mtr-Chr6 17813662 17816060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1238 42 662 GRAS Transcription Factor Family AT5G52510 45.802 5.58e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr6g1238 GRAS 2.9e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1238 - - gmx:100788551 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1238 6 17813662 17816060 Mtr6g1238 6 17813662 17816060 ECH