Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1233 ATGGAAGAAATCAACAACACAACAATGAACGTATCATCAACCAACAGCTGGTTATCTGATTTGGAAATGGACGAATACAATTTATTTGCAGAGGAAAGCAACCTGAATTTTCTTGATACAGATGTGGTAGAGTTTCTTTCACATGACATAGGTAATGTATTCCAAGAACAAAACAAACAACAATGTTTCACTTCAGGGTCCACTCCCAAATCTCTTAGCAACTCATCATGTTATGAAACAAATATGGAGCTGAAAACAATTGATCATAGCAACAAAGTCAATGAAACCTTTTCACCAAAACTTTCTCCATCTAACTCATCTTTACAGTTTCAAATTCCATCTTTTGACAACTCTCCAAATTCACCCACTACAAAGTCCTCACAATTATGTGGATTTGACCCTACCTTAAACTCAAAACAAAACTTGGAAACAAAAACCTCAAAGAGCAAAAGGTCTCGTACACATCAAGGTCAAGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACCCAAAACTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTGGACAAATATTCTGTATTAGTTGACACTATCAAATATTTGAAAGAGCTTAAAAAGCGTTTGATAATTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGATAATCTTGACCAAACCAGGCCTCTGCAACAATGACAACTCCTCGTCATGTGATGAGAGCATTGATTGTGTTGTTGATTTACCATTTCAAGTGGAAGCAAGAATCTTAGGAAAATATATGTTGATTCGAATCCAATGCCAAGAGCACATAGGGCTTCTAGTTAAAATTATGGTTGAGATTCAAAGGTTTAAACTATTCGTTGTCAATAATAGTGTCTTACCTTTTGGAGATTCTATCCTCGACATTACTATTATTGCTCAGTTGGATGAAGGCTACAACATGTGCATAAAGGAACTTGTGAAGAACCTACGCATGGAAGCATTGAAGTTTATGTCATCATAA 1011 0.3581 MEEINNTTMNVSSTNSWLSDLEMDEYNLFAEESNLNFLDTDVVEFLSHDIGNVFQEQNKQQCFTSGSTPKSLSNSSCYETNMELKTIDHSNKVNETFSPKLSPSNSSLQFQIPSFDNSPNSPTTKSSQLCGFDPTLNSKQNLETKTSKSKRSRTHQGQDHIMAERKRREKLTQNFIALAALVPNLKKVDKYSVLVDTIKYLKELKKRLIILEEQNEKTKIESPIILTKPGLCNNDNSSSCDESIDCVVDLPFQVEARILGKYMLIRIQCQEHIGLLVKIMVEIQRFKLFVVNNSVLPFGDSILDITIIAQLDEGYNMCIKELVKNLRMEALKFMSS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1233 336 MobiDBLite consensus disorder prediction 144 161 - -
Mtr6g1233 336 PANTHER BHLH TRANSCRIPTION FACTOR 7 335 - -
Mtr6g1233 336 SMART finulus 161 210 IPR011598 GO:0046983
Mtr6g1233 336 MobiDBLite consensus disorder prediction 98 161 - -
Mtr6g1233 336 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 335 - -
Mtr6g1233 336 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Mtr6g1233 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 224 IPR036638 GO:0046983
Mtr6g1233 336 Coils Coil 201 221 - -
Mtr6g1233 336 Gene3D - 141 221 IPR036638 GO:0046983
Mtr6g1233 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Mtr6g1233 336 MobiDBLite consensus disorder prediction 98 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1233 Mtr-Chr6 17720527 17722463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1233 157 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.429 4.22e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr6g1233 HLH 4.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1233 - - mtr:MTR_0011s0210 435.647