Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1210 ATGGATTTGATATCAACTTCATCTGAGAGTGGACAACTGAGTGTTGAAGCTTCATCACTGATTCATGCTGAGAGTGGACAACTGAGTGTTGAAACTTCTTCAATGATTCATGCTGATAGTACTCAATGTTACTCCCCTAGCAATGAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGATTAATTCACAAAATAAGAAATCAGATAAGGTACATTATGTGCGTTATGTTTGTAACAAACAAGGTTTCAAGAAGGGAAGTTTGCTTAATACTAACAACAGGTCAACATCAGACAGTCCACTGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTCGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATTTATAGATGGGATGTGTCTCACTGTCATCCATTACATAAACCAGAGCATTTGTGTTACCTGAGATCATTTAGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTAATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTCTTGGTCAAGGAGTTGGAGGTACGGAGAATCTTCCTTTTCGGTTTTCAGACTTAAAGAACTATCTAATGACAATTCGTCAAAAGGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCATCTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGCATTTTTTGGGCAGATGGAATTATGCAACTAGATTATTCTCTATTTGGTGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATCAATATCGGCCATTAGCTGCCTTTATTGGTTTTGACAATCATCGCAAGAGTGTTTTATTTGGTGCTGAGCTATTGTACGATGAGACAGCAGCTACTTTTGATTGGTTGTTTACAAAATTCTTGAAGTGTGTTTTTCACGGGCTTTGTTCATGGCACATGGCAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTAGACGATGAATCAGATTTCGACTATAATTGGGATCAGATGATGAAAAATTGTTTTAATGGAAGGCCTACTTTAGACTTTAGGTGGCTTGTCCAAACTTACGGAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAAACAACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTCTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGAGATAATCATGCTGAGTTGGACTTCAAGGCTGAAAACACTAGAACAAAAAATAATTATCCCAATAGTCAGCTGATGCGGTCCGTTGTCAACAAGTATACACCAACTTGCTTTGCATTTATTCACAGGCAGTATGACCTTTCCTTCAAATACTATCATGAGGAGGACAAAACAAAATGGTCTGCCTTTAACAAGTTTTTCAAAGTTTTCACAATTGAAAAGGTTGATGATAATTATGATGATGTTGATAATGATAATGACGGGCCTTCCAATGTTGATGTTTTGGATGCAGAACTTCAAGAAAACCTTTTCCCAAGTTTTGAAGATCATGATCGACTTGATGAAAGGGTTGTCACAGTTGACATTAGAAGCAAAAGTTTTAGTTGTTCATGTCGTATGTTTGAGAACAGGGGCTTTTTATGTCGACATGTTTTGAAGATCTTTGAGTTCTTAGGTGGTTATGTGCAGTATCATTTTTTGAAGACAATACCTGGACAATATGTTTTAAAGCGTTGGACTAGAGATGTGCGTCTGTCTGTTGATAAGCTGAAATCTACCATCAATGTTGGCACTGAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACCGTTCAGCTTTCTACACGTTTTTGTGCAGATCCGGAGGCATCTCAAATTTTTCTCGACGGTGTTCTTGAAGCTGGGAAAAAGGCAGAGGAGTTGCTTCTGTCTAAAGGTATTCATACAGACCCATCTTACGTGACATCATCATCCAAGTCTTCAAAAGGAGCTGTTGTCGGTGAACCATCTACTGGGGTGAAGTCCACAGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAAGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGAAAGACAGAAATTCCTTATAAATCGGAAGAAACAAAAGAGAGATGATGAAGCTTTAAAAAAAAAAACGGTCACTGATTGA 2397 0.3713 MDLISTSSESGQLSVEASSLIHAESGQLSVETSSMIHADSTQCYSPSNEESWKSLVFQSIKEIEDFYGNYAYNTGFSIRTMLKSKINSQNKKSDKVHYVRYVCNKQGFKKGSLLNTNNRSTSDSPLVIEFVKVKEKPEERVGCKAGIYLKLDEVLNVYKIYRWDVSHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVLGQGVGGTENLPFRFSDLKNYLMTIRQKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYSLFGDVISFDTTYRTNNQYRPLAAFIGFDNHRKSVLFGAELLYDETAATFDWLFTKFLKCVFHGLCSWHMAENAKKNLGSRANSAFFDELTNLVSNVDDESDFDYNWDQMMKNCFNGRPTLDFRWLVQTYGNRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAENTRTKNNYPNSQLMRSVVNKYTPTCFAFIHRQYDLSFKYYHEEDKTKWSAFNKFFKVFTIEKVDDNYDDVDNDNDGPSNVDVLDAELQENLFPSFEDHDRLDERVVTVDIRSKSFSCSCRMFENRGFLCRHVLKIFEFLGGYVQYHFLKTIPGQYVLKRWTRDVRLSVDKLKSTINVGTEDTTQAQRYQQICAVTVQLSTRFCADPEASQIFLDGVLEAGKKAEELLLSKGIHTDPSYVTSSSKSSKGAVVGEPSTGVKSTAPKFKERPNPIKSKKRLKSDYEKARERQKFLINRKKQKRDDEALKKKTVTD* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1210 798 ProSiteProfiles Zinc finger SWIM-type profile. 592 626 IPR007527 GO:0008270
Mtr6g1210 798 SMART 26again6 601 628 IPR006564 GO:0008270
Mtr6g1210 798 MobiDBLite consensus disorder prediction 722 736 - -
Mtr6g1210 798 PANTHER OS03G0181600 PROTEIN 350 699 - -
Mtr6g1210 798 PANTHER OS03G0181600 PROTEIN 57 345 - -
Mtr6g1210 798 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 350 699 IPR031052 GO:0006355
Mtr6g1210 798 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 345 IPR031052 GO:0006355
Mtr6g1210 798 MobiDBLite consensus disorder prediction 722 798 - -
Mtr6g1210 798 Pfam MULE transposase domain 294 348 IPR018289 -
Mtr6g1210 798 Pfam SWIM zinc finger 602 623 IPR007527 GO:0008270
Mtr6g1210 798 Pfam FAR1 DNA-binding domain 65 172 IPR004330 -
Mtr6g1210 798 MobiDBLite consensus disorder prediction 752 798 - -
Mtr6g1210 798 Coils Coil 761 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1210 Mtr-Chr6 17028356 17031593 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr6g1210 FAR1 1.9e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1210 - - mtr:MTR_0558s0020 562.377