Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1192 ATGGCAAAGTCCTTTTCGTGTTATTCATGGTTTACGTTATTTTTACTTTTTGTGGTAGAGACACAAACGGCTGTGACTTCAAGTGGGTCAAATGAAACATCGATTGGAGTAATCAAGTTGAGAGTTGGAGTCCCTAAGAAAGAAGGTTTCGACCAATTTGTGAGAATAGTCTGGGACTCTCATGAAAACAAGTACAATGTTTCTGGATATTGCATCGATGTTTTCAACGCCGTTGTAAACAACTTAACATTTAAGGTTTCTGTACAAATGGAACCTCATGTTATTAATGGATCAGAATCAGTTGGATCATACTACAACTCAATTCTTAAACAAATCCCAACAAAGTATGATGTTGCGGTGGGCGACATAACAATCATGGCACGTCGTGCACAATTTGTAGATTTCACACTGCCATATACAGAAATGGGGGTTAGAATGTTGGTTCCAATGGTACACGGGAGGCACCAAACCATGTGGATTTTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCACACTCATAATCTCCATGCTTATAGGGGTTGTTTTACTTATTATGGAAAGAAACGTACATACCCTTCCTCATCAAGACCAAAGTTCATCATATCGACAACAACTAACCGCAGTAACCATTTTATGGTTTCCGATATCACAAGCCGTTCTTCCTGAAAGACAGGTAGTTGCCAAGAACTGCTCGAGATTTGTGTTGATGGTTTGGCTTCTATTGGCGTTTGTCCTCATGCAAAGTTACACAGCAAACTTGACGTCTATATTAACCGTAGATCAGATACAACCTAGATTTCTCACTTTGAATGATCTAAAGAAATGGGGTTATTATGTTGGATATCAAACTGGTTCTTTCGTTTATGATATTTTGGTAGAACAATTGAAGTTTGATCCATCCAAGTTGAGGGGATATAAAAACATTTATAGCTACCACGATGCTTTAAAGCTTGGAAGCCAAGGTGGTGGTGTCATAGCTATTTTCGACGAAGTGCCCTATCTTAATGCCTACCTTCAAACGTTTGGATCAAATTACATCATAGCTGGTCCGACCTTTAGATCTGAAGGATTTGGTTTTGCATTCCCTTATAAATCCAATCTTACAGAGCACTTTTCAAGAGCCATCTTGAATGTGACTGAAAATTATGATATAATGCATAAAATTGAGGAAAAATATTTTGGGAGAATCGAAGATGTACAAAAGCAGTCTACGCAAGTGTCTTCAGCATCACCAAGTCTTACCTTTCACAGCTTCGCAGGGCTGTTCATGATTACTGGCATTTCAATCTCTTTGGCTTTAATTGTCTCTGAAACTCTTATTTGGCAAAAGTGTATTTTAAAGATTAAAGAATACACTAATAGATACTTGTTACGCTCCACACCATCTACAGAAACACATGTTCTTCCAAACGATCTTCAAGCAACACAGGAAACAAATTGA 1446 0.3817 MAKSFSCYSWFTLFLLFVVETQTAVTSSGSNETSIGVIKLRVGVPKKEGFDQFVRIVWDSHENKYNVSGYCIDVFNAVVNNLTFKVSVQMEPHVINGSESVGSYYNSILKQIPTKYDVAVGDITIMARRAQFVDFTLPYTEMGVRMLVPMVHGRHQTMWIFVKPFSWDLWLSTLIISMLIGVVLLIMERNVHTLPHQDQSSSYRQQLTAVTILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTVDQIQPRFLTLNDLKKWGYYVGYQTGSFVYDILVEQLKFDPSKLRGYKNIYSYHDALKLGSQGGGVIAIFDEVPYLNAYLQTFGSNYIIAGPTFRSEGFGFAFPYKSNLTEHFSRAILNVTENYDIMHKIEEKYFGRIEDVQKQSTQVSSASPSLTFHSFAGLFMITGISISLALIVSETLIWQKCILKIKEYTNRYLLRSTPSTETHVLPNDLQATQETN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1192 481 PRINTS NMDA receptor signature 169 194 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Mtr6g1192 481 PRINTS NMDA receptor signature 235 262 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Mtr6g1192 481 PRINTS NMDA receptor signature 420 444 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Mtr6g1192 481 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 480 - -
Mtr6g1192 481 Pfam Bacterial extracellular solute-binding proteins, family 3 64 396 IPR001638 -
Mtr6g1192 481 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 480 - -
Mtr6g1192 481 Pfam Ligand-gated ion channel 397 430 IPR001320 GO:0015276|GO:0016020
Mtr6g1192 481 Gene3D - 321 359 - -
Mtr6g1192 481 Gene3D - 360 395 - -
Mtr6g1192 481 SUPERFAMILY Periplasmic binding protein-like II 39 396 - -
Mtr6g1192 481 SMART GluR_14 39 397 IPR001320 GO:0015276|GO:0016020
Mtr6g1192 481 Gene3D - 34 157 - -
Mtr6g1192 481 Gene3D - 158 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1192 Mtr-Chr6 16715737 16718964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1192 39 426 Ion Channels AT5G11210 37.084 3.26e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1192 K05387 - gmx:100811144 593.964