Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1189 ATGAGCAGAGGAAAATCATTCTGCTTTGCGGAATCAATATCACTTGTATGCTTCCTCCAAATTGTTATGCTGCTACCGCATCATCATCATCAAACATGTCATGCAATCGTTAATAACAAAACATTTTGTCCAACTTCTTCATGCGGTAAAATCAGCAACATAAAACATCCATTTCGACTTAAGAATGACCCAGCGACCTGTGGGGATCCGAGCTACGAGTTATCCTGCGAAAACAACATCACAACCTTAAATCTGTTTTCAGGTAAGTACTATGTGTTGGAAATCAACTATAAAAACTACACAATTAGGTTAGTTGATGCCGGGTTGCAAGAGGGTGATTGCTCCTCCATTCCTCGTTACTTCTTAACCACATCCAACTTCTCAAGTTTTTACTTTAGTATCAACGACGGCGAACCATATCAAACCAATTATCTGCCTGGGTACATAATATACTTGAAGTGTAGCAAATCAGTGAATGATGATCCTGAGTACGTGGATACCGCTCCCTGCATCAGCTCGGACTCCAAAAGCCATGTTTACGCTTATGCCGGGGGATACTTGACAGTTGGGAAATTAAAAGATTATTGCAAAGTGATGCTTGTAGCTATGTCATCCTCAGATTTTCATAGTGTCAGTGTTAGAGAAGGTGTACCAGATCGACCCCTTTCATACGAGGAGGATATTCATGCAATGCTACTCTATGGATTTGAGTTATCTTGGATCAGCGGTGCTTGTAGGGAATCTTGCGGCGATAACATGGGGTGCAACTTGAACTACACGACCGGAGATCTTGAATGTTATAGAGACTTCAACCGATTTCGATATTGCCATTATCCATTCAGATTTCAATCGATCAATTGCAACCAAAAAATATCAAAGCTGGTCATATTAGTGGAAGATATTATACTTGGCATTATTAAAGGAGCATTACAAGTAATTGGCACGAAAAAAACCTATGCATTTTCCGAGGAAGATATTTCTCTTTCTAAAATTGGCATTGAGATAGGAAGAGTCACAGGAAGATATATCTTGCCATCACTTATAGTGAGATTTTCATTGGGATTCATTGTTTTCTTTGTTCTATTGATATATACATGTCGAAGCAGACATAACTCAATTTACGAAAATATTGAAGTTTTTCTTCGTGGAAGTACCTTGATGCCAATAAGGTATTCATACAAAGAAATAAAAAAGATGACTAGAGGTTTCAGAGACAAGTTGGGTGAAGGTGGTTTTGGTGCTGTTTATAAAGGAAAGCTATGCAGCGGGCCATTTGTGGCCATAAAGATGTTGGGTAAATCTAAGAGCAATGGACAAGATTTTATTAATGAAGTGGCAACCATAGGAAGAATACATCACACCAATGTAGTTCGACTTATTGGATTTTGTGTTGAGGGATCAAAGCGTGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATATATTTCTTCTAGCGAGGATGCTATCTCTCTAACTTATAAGCAAATGTATGAGATATCTCTTGGAGTTGCTCGTGGTATGGCTTACTTACATCAAGGATGTAACATGCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGAGAACTTTATCCCCAAAGTTTCCGACTTTGGTCTTGCAAAGCTTTATCCTAATGAGATTAGTATTGTCACTTTAACTGCAGCAAGAGGAACGATTGGATACATGGCTCCTGAATTATTCTACAAAAATATTGGAGGAGTTTCGTATAAGGCCGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTAAATCCACATGCGGATCGTTCAAGCCAACTTTTCTTCCCTTTTTGGATTTATAATCAATTGATTGAAAAAAGGGAGATAGAGATGGACCAAATTAGTGATGAGGAAAGAAATAATGTGAATAAAATGTTCATAACTGCATTATGGTGTATTCAATTAAAACCAAGTGATCGTCCTTCAATGAACAGAGTGATAGAGATGCTTGAAGGAGATATTGAGAATGTTGAAATGCCTCCAAAGCCCTCTTTGTATCCAAATGAAATGATTGAGGAAGACCTTGACGTCAACTCTAATGAAACTGAATCTGAAAATGATGGCTCTATTAGTTTCATTGAATAA 2148 0.3766 MSRGKSFCFAESISLVCFLQIVMLLPHHHHQTCHAIVNNKTFCPTSSCGKISNIKHPFRLKNDPATCGDPSYELSCENNITTLNLFSGKYYVLEINYKNYTIRLVDAGLQEGDCSSIPRYFLTTSNFSSFYFSINDGEPYQTNYLPGYIIYLKCSKSVNDDPEYVDTAPCISSDSKSHVYAYAGGYLTVGKLKDYCKVMLVAMSSSDFHSVSVREGVPDRPLSYEEDIHAMLLYGFELSWISGACRESCGDNMGCNLNYTTGDLECYRDFNRFRYCHYPFRFQSINCNQKISKLVILVEDIILGIIKGALQVIGTKKTYAFSEEDISLSKIGIEIGRVTGRYILPSLIVRFSLGFIVFFVLLIYTCRSRHNSIYENIEVFLRGSTLMPIRYSYKEIKKMTRGFRDKLGEGGFGAVYKGKLCSGPFVAIKMLGKSKSNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRALVYEFMPNGSLDKYISSSEDAISLTYKQMYEISLGVARGMAYLHQGCNMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNEISIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIYNQLIEKREIEMDQISDEERNNVNKMFITALWCIQLKPSDRPSMNRVIEMLEGDIENVEMPPKPSLYPNEMIEEDLDVNSNETESENDGSISFIE* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1189 715 Pfam Protein kinase domain 405 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1189 715 SUPERFAMILY Protein kinase-like (PK-like) 385 672 IPR011009 -
Mtr6g1189 715 Gene3D Transferase(Phosphotransferase) domain 1 476 681 - -
Mtr6g1189 715 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 15 698 - -
Mtr6g1189 715 Coils Coil 621 641 - -
Mtr6g1189 715 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 698 IPR045874 GO:0004672
Mtr6g1189 715 Gene3D Phosphorylase Kinase; domain 1 382 475 - -
Mtr6g1189 715 ProSiteProfiles Protein kinase domain profile. 401 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1189 715 Pfam Wall-associated receptor kinase galacturonan-binding 43 106 IPR025287 GO:0030247
Mtr6g1189 715 SMART serkin_6 401 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1189 715 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Mtr6g1189 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1189 Mtr-Chr6 16629161 16644675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1189 44 687 Receptor kinase-like Gene Family AT5G38260 35.714 6.48e-113 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr6g1189 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1189 - - mtr:MTR_1g027830 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1189 6 16629161 16644675 Mtr6g1189 6 16629161 16644675 ECH