Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1173 ATGAATTTTCAAGATCCAAACCCTTCCATATCGCGCACCATCGTTCCAATTCCCAACGAGTTACAAAATTACGACAGCAACACTCTGAAGGAAAAAGCTTTAAAATCTAAGCAGAAGCTTAGAGGGCAGAACAAGGAGCTTGTTCACACTGCGATGGATGCGGATCACCGTTTGCTGGAAGAAGAGAATATTTGTAAGAACAAAAAGAATTTGAAAGCTTCTTCTATGATAAACCAGACAGAAGAAGTGAATAATAGTAGGGTCCAAAATGACTTGATTGCTGCTACTCTGATGAAAGATCATGGTATGTATTTGTATCATGATGTGAAAATTATTGGTACAGTTCCTGGTGTTTGTATTGGTGATATTTTTCGCTATAGAAGCGAAATGTGTGTGATTGGCTTAAATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCAAGCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACTCTATTATGTACTTTGGACATGGTGATATGAAGCAGGATCAGAAGTTGGGACGAGGCAACCTTGCTATGGTAACAAGTATACAATATGAGATTGATGTCAGGGTTATTCGAGGTTTTCGATATGAAGGTGGTACTTCTACTACTAGTAGTAAGGTTGGTGTTTATCAGTTTATGTTATCAAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCCAGTATGCTTATGAGAGGCCATTTATGTGATAATCATATGTATGTCCTTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGTGTGAGGTTATATTATGAGATTGATAGTGATCTCTATCCTATGCAATTTGAGTATCTCCCAAAGGCGGCATTTCCAATGTTGTTGCTTCCTCAAAGTATGACGACGAGGAAAAAGATGAGGGTGATAGAGTGTTCTGAATGCGTTGATGGATGTGTTTCTTCAATCATGAATAGCAACACTACCCCTTATAGTAAAAGTGGGATTCTTTGGAAAGGGAGGTCGTTGATTTATGAATGCGGCCCTTTTTGTAGCTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATACAGGTTGGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATGTGAGTTCACCGGACTTGTTTTGACTAGGGAGCAAGCGGAAATTTTGACCATGGATGGTGAACATAACTCTTTTATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGAGATTTGTCGATGATTGATGCTAATCATGTGCATCCCGCATATCCTACTTTAGATTTTGCATTGGATGTATCAATGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTTTCATCATGGTAATTGGATGTTTCCGCATCTTATGGTATTTGCAATGGAAAACATCCCTCAAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAAGCTAGGTAG 1581 0.3884 MNFQDPNPSISRTIVPIPNELQNYDSNTLKEKALKSKQKLRGQNKELVHTAMDADHRLLEEENICKNKKNLKASSMINQTEEVNNSRVQNDLIAATLMKDHGMYLYHDVKIIGTVPGVCIGDIFRYRSEMCVIGLNGQPQAGIDYLHASMSSNGQAIATSVVVSDGYNDDDQGDSIMYFGHGDMKQDQKLGRGNLAMVTSIQYEIDVRVIRGFRYEGGTSTTSSKVGVYQFMLSRVQGQPKMGSMILKEASMLMRGHLCDNHMYVLSDDISNGKENIGVRLYYEIDSDLYPMQFEYLPKAAFPMLLLPQSMTTRKKMRVIECSECVDGCVSSIMNSNTTPYSKSGILWKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSFIIYPNRFLNRSTQEWGDLSMIDANHVHPAYPTLDFALDVSMMRNVASYISHSPTPNVFVQLVLFHHGNWMFPHLMVFAMENIPQMRELSLDHGVEAR* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1173 526 ProSiteProfiles Pre-SET domain profile. 321 375 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1173 526 Pfam SET domain 390 522 IPR001214 GO:0005515
Mtr6g1173 526 ProSiteProfiles YDG domain profile. 113 253 IPR003105 -
Mtr6g1173 526 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 11 524 - -
Mtr6g1173 526 Pfam SAD/SRA domain 112 216 IPR003105 -
Mtr6g1173 526 Gene3D SET domain 244 526 IPR046341 -
Mtr6g1173 526 Gene3D - 110 243 IPR036987 -
Mtr6g1173 526 SMART G9a_1 108 239 IPR003105 -
Mtr6g1173 526 ProSiteProfiles SET domain profile. 378 522 IPR001214 GO:0005515
Mtr6g1173 526 SUPERFAMILY PUA domain-like 95 248 IPR015947 -
Mtr6g1173 526 SMART preset_2 267 362 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1173 526 SMART set_7 378 523 IPR001214 GO:0005515
Mtr6g1173 526 Pfam Pre-SET motif 270 370 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1173 526 SUPERFAMILY SET domain 261 523 IPR046341 -
Mtr6g1173 526 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 11 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1173 Mtr-Chr6 16301096 16302798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1173 74 526 Su(var)3-9 homologs AT1G73100 32.530 1.64e-61 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr6g1173 SET 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1173 K11420 - mtr:MTR_6g043960 952.97