Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1172 ATGAATTTTCAAGATCCAAACCCTTCCATATCGCGCACCATCGTTCCAATTTCTAACGAGTTACAAAATTACGACAGCAACACTCTGGCGGGAAAAGCTTCAAAATCTAAGCAGAAGCTTAGAGGGCAGAAAAAGGAGCTTGTTCACACTGAGATGGATGCGGATCACAGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATTTTGTTTGATTCGATTCGTGTGTCAGGTTTGCTAGAAGAAGAGAATAATCGTAAGAACAAAAAGAATTTGAAAGCTTCTTCTTTGATAAACCAGACAGAGGAAGTGAATAATAGTAGGGTCCGAAATGACTTGATTGCTTCTACTCTGATGAACGATCATGGTATGTATTTGTTTCCTGATATGAAAATTATTGGTACAGTTCCTGGTGTTTCCATTGGTGATATTTTTCTCTATAGAAGCGAAATGTGTGTGATTGGCTTACACGGTCAACCACAAGTTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCAACCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACTCTATTATCTACTCTGGCCATGGTGATATGAAGCAGGATCAAAAGTTGGAACGAGGCAACCTTGCTATGGTGAGAAGTATGCAATATGAGATTGATGTCAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATATTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCAAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCCAGTATGCTTATGAGAGGCCATTTATGTGATAATCATATGTATGTCCTTTCTGATGATATTTCCAATGGGAAGGAGAATATTGGTGTGAGGCTATATAATGACATTGATAGTGATCTCTATCCTATGCAATTTGAGTATCTCCCGAAGGCGGCATTTCCAATGTTCTTGCTTCCTCATAGTATGACGACAAGGAAAAAGATGAGGGTGATAGAGTGTTCTGAATGCGTTGATGGATGTGTTTCTTCAATCATGAATGGCAACACTACCCCTTATAGTAAAAGTGGGATTCTTTTGAAAGGGAGGTCATTGATTTATGAATGTGGTCCTTTTTGTAGCTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATACAGGTTGGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATATGAGTTCACCGGACTTGTTTTGACTAGGGAGCAAGCGGAAATTTTGACCATGGATGGTGAACATAACTCTTTTATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGAGATTTGTCGATGATTGATGCTAATCATGTGCATCCAGCATATCCTACTTTAGATTTTGCATTGGATGTATCAATGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTTTGATCATGGTAATTGGATGTTTCCCCATCTTATGGTATTTGCAATGGAAAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAAGCTGGGTAG 1704 0.3867 MNFQDPNPSISRTIVPISNELQNYDSNTLAGKASKSKQKLRGQKKELVHTEMDADHSPYREMVRRTRILFDSIRVSGLLEEENNRKNKKNLKASSLINQTEEVNNSRVRNDLIASTLMNDHGMYLFPDMKIIGTVPGVSIGDIFLYRSEMCVIGLHGQPQVGIDYLHASMSSNGQPIATSVVVSDGYNDDDQGDSIIYSGHGDMKQDQKLERGNLAMVRSMQYEIDVRVIRGFRYEGGTSTTSSKVFVYDGLYKIIEYWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLMRGHLCDNHMYVLSDDISNGKENIGVRLYNDIDSDLYPMQFEYLPKAAFPMFLLPHSMTTRKKMRVIECSECVDGCVSSIMNGNTTPYSKSGILLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFIYEFTGLVLTREQAEILTMDGEHNSFIIYPNRFLNRSTQEWGDLSMIDANHVHPAYPTLDFALDVSMMRNVASYISHSPTPNVFVQLVLFDHGNWMFPHLMVFAMENIPPMRELSLDHGVEAG* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1172 567 Pfam SET domain 431 563 IPR001214 GO:0005515
Mtr6g1172 567 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 11 565 - -
Mtr6g1172 567 ProSiteProfiles Pre-SET domain profile. 362 416 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1172 567 ProSiteProfiles SET domain profile. 419 563 IPR001214 GO:0005515
Mtr6g1172 567 ProSiteProfiles YDG domain profile. 133 276 IPR003105 -
Mtr6g1172 567 SMART G9a_1 128 280 IPR003105 -
Mtr6g1172 567 SMART preset_2 308 403 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1172 567 Coils Coil 79 99 - -
Mtr6g1172 567 SUPERFAMILY PUA domain-like 116 289 IPR015947 -
Mtr6g1172 567 Pfam Pre-SET motif 311 411 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr6g1172 567 SMART set_7 419 564 IPR001214 GO:0005515
Mtr6g1172 567 Gene3D - 130 284 IPR036987 -
Mtr6g1172 567 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 11 565 - -
Mtr6g1172 567 Pfam SAD/SRA domain 132 280 IPR003105 -
Mtr6g1172 567 Gene3D SET domain 285 566 IPR046341 -
Mtr6g1172 567 SUPERFAMILY SET domain 302 565 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1172 Mtr-Chr6 16291120 16292823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1172 60 564 Su(var)3-9 homologs AT5G04940 34.423 5.14e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr6g1172 SAD_SRA 6.3e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1172 K11420 - mtr:MTR_6g043960 890.952