Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1168 ATGTCTTCTCAAGAACTTGAACATCAGAACAATGGTGTCCACTTTTTCAAAATTATTCTTGCAAGTATCCTTCAAGAAGGAAAACTGAGAGTGCCAATAAATTTTGCGAGGAGGCATTGGCATGGAATAACAAACCCAGTCACTCTAAGGCTTCCAACTATGGCACAAATGAACGTTACTTGGGAGAAAACCAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGCGTGATTCACAACTTTTGGTCTTTCGATATCGAAAAAAATCTCTCTTTGATGTGATTGTATTCGGTAAATGCGGATTAGAAATAAAATACCCTTTAAGAGAAACTTGTGATGGTTCTTTGAAAGTTACCGAGGATCCTTCATCATCGCCTGGTAAAAGGCGAAAATCTCCATCACCATGTGTGAAGGTGATACCAACTGAATTTGTGAAGACACATATGCACATGATGGAAGAAGGAAATGCTATCCTTTTTGTTGATCAAGATAGAACATGGAATGTTGATTTGGATCTCACTCTAAATAAACAATTTGCACTAACAAGTGGTTGGAGTGAATTCTGTGCTCACAATAATTTGAAATTTGGTGATGGTTGGCTTGAATTTTTGAAGGATTGTTACTTGAAAGAGGGTGATACTTGCCTATTGAAGATGAGTGGCGGCACTGGTTTAGAATTGGAGAAACCTAGAACCAGTGGCGGTGCCACATATAAGTGA 744 0.3777 MSSQELEHQNNGVHFFKIILASILQEGKLRVPINFARRHWHGITNPVTLRLPTMAQMNVTWEKTSDYDVWFCNGWKEFANYLSLRDSQLLVFRYRKKSLFDVIVFGKCGLEIKYPLRETCDGSLKVTEDPSSSPGKRRKSPSPCVKVIPTEFVKTHMHMMEEGNAILFVDQDRTWNVDLDLTLNKQFALTSGWSEFCAHNNLKFGDGWLEFLKDCYLKEGDTCLLKMSGGTGLELEKPRTSGGATYK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1168 247 CDD B3_DNA 14 105 IPR003340 GO:0003677
Mtr6g1168 247 PANTHER B3 DOMAIN-CONTAINING 5 131 - -
Mtr6g1168 247 PANTHER B3 DOMAIN-CONTAINING 146 206 - -
Mtr6g1168 247 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Mtr6g1168 247 MobiDBLite consensus disorder prediction 123 142 - -
Mtr6g1168 247 CDD B3_DNA 147 232 IPR003340 GO:0003677
Mtr6g1168 247 SUPERFAMILY DNA-binding pseudobarrel domain 144 206 IPR015300 -
Mtr6g1168 247 Gene3D - 7 108 IPR015300 -
Mtr6g1168 247 Gene3D - 136 207 IPR015300 -
Mtr6g1168 247 Pfam B3 DNA binding domain 146 206 IPR003340 GO:0003677
Mtr6g1168 247 ProSiteProfiles B3 DNA-binding domain profile. 147 231 IPR003340 GO:0003677
Mtr6g1168 247 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Mtr6g1168 247 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 131 - -
Mtr6g1168 247 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 146 206 - -
Mtr6g1168 247 SMART B3_2 15 111 IPR003340 GO:0003677
Mtr6g1168 247 SMART B3_2 144 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1168 Mtr-Chr6 16196219 16199856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1168 15 129 B3 DNA Binding Superfamily AT1G49475 38.261 1.54e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr6g1168 B3 2e-08 CL0405