Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1155 ATGAGATCACAAAGCGAAGATCCTTTTCCCCCACCACCTCCCACTGTTCCTCGAAATGTTAAACCAGTAATTATTGAACAAGAGCATGTAAAGAAGAAGCTTCTATCTAAAGTTCCGATGGCTAGACGTGGCCTAGGAACAACGGGAAATAAACTGTCTTTGTTAACAAATCACTTTAAAGTGAATGCCGCTAACACCGATGGGTTTTTCTTTCAGTACAATGTTGCTATATTTTATGAAGATGGATGCCCGGTTGAAGCGAGCGGTGCTGGTAGGAAGATACTTGATAAAGTTAAAAAAACTTATGATTCTGAGCTTAGAGGAAAAGACTTTGCTTACGACGGGGAGAAGACTCTATTTACAATGGGCTCTCTAGCTCAGAACAAGCTTGAGTTTACTGTTGTTCTTGAAGATGTAACGTCTAGCAGAAACAATGGAAATTGTAGCCCTGAAGGGATCAGAAGTTCTAATGACATTGATAGTAAGAGGATCCGAAGACCCTTCCGATCAAAGTCATATAAAGTTGAAATCAACTATGCATCAAAAATTCCTCTGCAGGCCATTGACAGAGCCTTTAAGGGTCAAGAAACCGAGAATTATCAAGAAGCCCTAAGGGTTCTTGATACTATCTTGAGACAACATGCTGCCAAACAAGGATGTTTGCTTGTGCGCCAAAGTTTCTTCCATAACGATCCCAGGAGTTTCAAGAATGTAGGTGGTGGAGTACTTGGATGCAGAGGGTTGCATTCGAGCTTTAGAACCACACAAAGTGGACTGTGTTTGAATATAGATGTGTCAACAACAATGATTGTTCAACCGGGGCCTGTAGTTGACTTCTTGATTGCAAATCAAAATGTGAAAGATCCTTTCAACCTTGATTGGATTAAGGCCAAAAGGACTCTTAAAAACTTGAGAATCACGACTATGCCGTCCAACCAAGAGTTCAAAATCACTGGGCTGAGTGAAAGGCCATGCAAAGACCAGCTGTTTACGTTGAAGAAGAGAGGTGCTGCTCCTGGAGAAGATGATTCAGAGGAGATCACAATTTATGAATATTTCGTTAACCGGCGAAAAATTCCTCTTAAGTATTCTGCTCGTCTTCCATGTATTAATGTCGGGAAGCCAAAACGACCTACGTATTTCCCAATTGAGCTTTGTTCATTGGTATCCCTACAACGATACACCAAAGCCCTCTCTGCACATCAAAGAGCCTCCCTTGTGGAACAGTCGAGGCAGAATCCTCTAGAACGGATGAAGGTCTTGTCAGATGCGTTGCAAACAAGCAACTACGGCTCTGAGCCCATGCTACGTACCTGTGGCATTACAATAAAACCGCATCTTACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGACGTTCGGCAATGGGGAATATTTCAATCCCAAAGATGGTAGATGGAACTTCAATAATAAGAAAATTGCGCAACCGGTTACAATAGCAAACTGGGCTGTGGTGGACTTTTCTAATTACCGTGATGTGCGAGGACTTGTGAGGGATTTGATAAAATGTGGAAGAATGAAAGGAATTCATATCGAACCACCTTGTCATGAATTTGAAGAAAATCGCCAATTTAGCCGCGCACCACCAATGGTTAGAGTTGAGAAGATGTTTCAGGAAATGCAGTCAAAAATGAAAGATCCTCCTAAGTTTATCCTTTGCCTGCTTCCTCAGAAGAACTGTGATCTTTACGGTCCGTGGAAGAAAAAGAATCTTGCGGAGGAAGGAATCATTACTCAGTGCATAGTCCCTAGCAAGGTTAACGACCAATATCTAACCAATGTTTTGCTGAAGATCAATGCTAAGCTTGATGGGATAAATTCTTTTTTAGGCATTGAACACGCTCGTTCTATGCCTATTGTTTCTAGAGAACCGACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAATCTGAAATTCCTTCAATTGCTGCGGTCGTGAGCTCGAGGCAATGGCCACTGATATCTAAATATAGGGCATGTGTTCGAACTCAAGGTTCAAAGGTTGAGATGATCGACAATTTGTTCAAGCCAATGCCTAATAACGAAGATGCAGGAATTATAAGGGAACTTTTGGTTGATTTCTATAATAGTTCTGGGCAAAGAAAACCAGCCAATATCATCATTTTCAGGGATGGTGTTAGTGAGTCTCAGTTCAACCAAGTTTTGAACGTCGAACTCGGCCAAATCATCGAGGCTTGTAAATTTCTTGATGAAGACTGGAACCCCAAGTTTTTGTTGATTGTTGCCCAGAAGAGACATCACACAAAATTCTTCCAACCTGAAAATCGAAACAATGTGCCACCTGGAACTGTTGTGGACAACAAAATTTGTCATCCTAGGAATTATGATTTCTATATGTGTTCTCATGCAGGAAGAATTGGTACAACCAGGCCAACACATTATCATGTTCTTTTGGATGAGATTGGTTTTTCTCCAGATGAATTGCAAGAGTTTGTGCACTCTCTATCTTATGTCTATCAGCGAAGCACCACCGCCGTCTCTGTCGTTGCTCCAATATGCTACGCACACTTGGCTGCTTCTCAAGTTGCACAGTTCATGAAGTTTGAGGATATGTCTGAAACTTCTAGCAGAAGAGAAGGTGATAGCAATGCCTCCCTCGTCCCACAGTTACCAAAGTTAGATCGGAGAGTATGCAACTCTATGTTTTTTGTTTGA 2712 0.4189 MRSQSEDPFPPPPPTVPRNVKPVIIEQEHVKKKLLSKVPMARRGLGTTGNKLSLLTNHFKVNAANTDGFFFQYNVAIFYEDGCPVEASGAGRKILDKVKKTYDSELRGKDFAYDGEKTLFTMGSLAQNKLEFTVVLEDVTSSRNNGNCSPEGIRSSNDIDSKRIRRPFRSKSYKVEINYASKIPLQAIDRAFKGQETENYQEALRVLDTILRQHAAKQGCLLVRQSFFHNDPRSFKNVGGGVLGCRGLHSSFRTTQSGLCLNIDVSTTMIVQPGPVVDFLIANQNVKDPFNLDWIKAKRTLKNLRITTMPSNQEFKITGLSERPCKDQLFTLKKRGAAPGEDDSEEITIYEYFVNRRKIPLKYSARLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSAHQRASLVEQSRQNPLERMKVLSDALQTSNYGSEPMLRTCGITIKPHLTQVDGRVLQAPRLTFGNGEYFNPKDGRWNFNNKKIAQPVTIANWAVVDFSNYRDVRGLVRDLIKCGRMKGIHIEPPCHEFEENRQFSRAPPMVRVEKMFQEMQSKMKDPPKFILCLLPQKNCDLYGPWKKKNLAEEGIITQCIVPSKVNDQYLTNVLLKINAKLDGINSFLGIEHARSMPIVSREPTLILGMDVSHGSPGQSEIPSIAAVVSSRQWPLISKYRACVRTQGSKVEMIDNLFKPMPNNEDAGIIRELLVDFYNSSGQRKPANIIIFRDGVSESQFNQVLNVELGQIIEACKFLDEDWNPKFLLIVAQKRHHTKFFQPENRNNVPPGTVVDNKICHPRNYDFYMCSHAGRIGTTRPTHYHVLLDEIGFSPDELQEFVHSLSYVYQRSTTAVSVVAPICYAHLAASQVAQFMKFEDMSETSSRREGDSNASLVPQLPKLDRRVCNSMFFV* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1155 903 Pfam Piwi domain 559 866 IPR003165 GO:0003676
Mtr6g1155 903 SUPERFAMILY Ribonuclease H-like 543 864 IPR012337 -
Mtr6g1155 903 CDD Piwi_ago-like 434 865 IPR045246 -
Mtr6g1155 903 MobiDBLite consensus disorder prediction 1 20 - -
Mtr6g1155 903 Pfam Mid domain of argonaute 469 522 IPR032473 -
Mtr6g1155 903 Gene3D - 626 903 IPR036397 GO:0003676
Mtr6g1155 903 SMART Piwi_a_2 559 866 IPR003165 GO:0003676
Mtr6g1155 903 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 902 - -
Mtr6g1155 903 SMART DUF1785_2 221 273 IPR014811 -
Mtr6g1155 903 Pfam N-terminal domain of argonaute 52 211 IPR032474 -
Mtr6g1155 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 902 - -
Mtr6g1155 903 MobiDBLite consensus disorder prediction 1 19 - -
Mtr6g1155 903 ProSiteProfiles PAZ domain profile. 298 390 IPR003100 GO:0005515
Mtr6g1155 903 Pfam PAZ domain 277 406 IPR003100 GO:0005515
Mtr6g1155 903 SUPERFAMILY PAZ domain 268 430 IPR036085 GO:0005515
Mtr6g1155 903 Gene3D paz domain 267 394 - -
Mtr6g1155 903 Gene3D - 454 618 - -
Mtr6g1155 903 Pfam Argonaute linker 2 domain 416 461 IPR032472 -
Mtr6g1155 903 Pfam Argonaute linker 1 domain 223 271 IPR014811 -
Mtr6g1155 903 ProSiteProfiles Piwi domain profile. 559 866 IPR003165 GO:0003676
Mtr6g1155 903 CDD PAZ_argonaute_like 273 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1155 Mtr-Chr6 15986504 15992902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1155 42 902 Eukaryotic Initiation Factors Gene Family AT5G43810 34.038 2.37e-155 480