Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1151 ATGAATTCTGCACCACAATCATCACTAGTCGCTGCTGCCGGCAGAAGCGGAGGAGATATGGCACCGTTTATTCAGAAGACGTATGACATGGTGGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCATTCTTCTCCCAAGCTATTTCAAACACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACATATGGATTTCGAAAAGCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTACAAAAGATCAAAAACATCTTCTGAAGGATATACACCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGCTTCTGCTATAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGATGCTGTCTCTCGAGAAAAATGCCCTTCAATCCAAACTCTTAAGTTACGATTATCTTGAGACGGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGCAGAGGCAGGCAAATTTGCAGACTTTCTTTGACAAGGCTCTTCAGGATTCTTTTATTGTGGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTGATAATAAGAAAAGGCGATTGTCTCAGGTTGATCGCATACAGCCTGTTGTCGAAGGTATTTTTCTTGACAATCCTTGCAGTTTCAGACTGGAATTTGGTAATGTTTTCTATCAAGATATCTCAAATAAACTAAGATTAGAATTATCACTAGCTGACTTAGATATGAACTTTATATCAGGTAGCACACAGGGTTCAAATGAAGATGAGGAAAGCTTGCAAAAAAATATTTCTGAATCCAAAGGAGCTGGTGATAATGTCCAAGTCGAAGCAGCTGCTCGGCATGGAGCGAATGATGTTTTTTGGGAACAATTCCTCACTGAAAGACCATGCTGTTCAGACAATGAAGAGGCAATATCAACCTAA 990 0.4162 MNSAPQSSLVAAAGRSGGDMAPFIQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRILLPSYFKHNNFSSFIRQLNTYGFRKADPDRWEFANEKFTKDQKHLLKDIHRRKPIHSHSHPPASAIDPERAALEQEIEMLSLEKNALQSKLLSYDYLETEKLQLEDFQRRLDGMEQRQANLQTFFDKALQDSFIVELLSRKIESMDLAADNKKRRLSQVDRIQPVVEGIFLDNPCSFRLEFGNVFYQDISNKLRLELSLADLDMNFISGSTQGSNEDEESLQKNISESKGAGDNVQVEAAARHGANDVFWEQFLTERPCCSDNEEAIST* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1151 329 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1151 329 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1151 329 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1151 329 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1151 329 SUPERFAMILY "Winged helix" DNA-binding domain 20 112 IPR036390 -
Mtr6g1151 329 Gene3D - 17 113 IPR036388 -
Mtr6g1151 329 Coils Coil 130 150 - -
Mtr6g1151 329 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 16 296 - -
Mtr6g1151 329 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 299 328 - -
Mtr6g1151 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 299 328 IPR027725 -
Mtr6g1151 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 296 IPR027725 -
Mtr6g1151 329 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g1151 329 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1151 Mtr-Chr6 15938567 15940330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1151 235 329 HSF AT4G13980 37.895 1.17e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr6g1151 HSF_DNA-bind 1.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1151 K09419 - gmx:100816484 371.318