LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g1124	ATGGCGATTGCAACCAGAAAAACCCTCTTCACTCTCTCTTCCTCCATTACCTTCCCATCCCGTTTCTCTCTCTTCAAACTCTCCCAAAACCCATCACCCCTCTTCCCAAAACGCTTCACACCATTCTCTTCTCTCACCACCACACCACAATCCTCACCATCATTGCTATCTGACCCTGATCAAGAGAAACACTCATTTCTCCTTGAGAAGTTGAGGATAAGACACTTGAAAGGTGGAAGTAGGAATGATGAAAGGGTGGTGAGGAAGGTTGAGGGGGTGAAGAAGAAGAAAGAGGGGGTTGATGAGGAGGATGGTGGTGGTGTTGGGAGTTTTGAAGGGTTGGGATTAGGGGATGAGGTTATGGGGGCTGTTAGAGAAATGGGTATTGAAGTTCCTACTGAGATTCAGTGTATTGGTGTTCCGGCTGTTTTGGATGGGAAGAGTGTTGTGTTAGGGTCTCATACTGGGTCTGGAAAGACTCTTGCTTACTTGCTTCCACTTGTTCAGTTGCTAAGACGGGATGAGCAAATGAATGGACTAGTGTTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAAGCGATAAGTCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAAGAAGAGTCACTTAGTAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATCGAGGAAGGAAATATGGTATACGGTGACATCCAATATGTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATCAAAAAATTCCTGGCCCCATTAAAACATCGCGCTTCAAAACCTGACAGCCTAGGTTTCCAGACTGTTTTGGTAACTGCTACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTACATCTGCGCACATCCTCGTTACATAAAAAGATTTCTAATGCTCGTCATGATTTTATAAAACTTTCTGGTACTGAGAACAAGCTGGATTCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTGAATTCTAGTCGTGCTGTGGATCACTTTCTTGAAGAAAATCAGATATCTACCGTTAATTACCATGGGGAGGTACCGGCAGCGCAAAGGGTTGAAAACCTCAACAAATTCAAGAGTAACAACGATGATTGCCCCACCTTGGTTTGCACAGATTTGGCTGCTAGGGGTCTGGACTTGGATGTTGATCATGTTATCATGTTTGACTTCCCTTTGAATTCAATTGACTACCTCCATCGCACAGGTAGAACTGCCCGTATGGGTGCAAAAGGGAAAATAACAAGTCTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAAATAGAGGAGGCAATAAAAAAGAATGAGAATTTGGAGGCTATCACAAAAGAAAGTGTCCGAATGGATGTAACCAGAAACCAAATCACTGAGCAGAGAAGAAAGAACAAAAATGTGGTTAAACCTTCAAAAGTTAGAGACATCTCTGATTCTCGCACCAGTTCTAAGAATACCAGATTAGGTACTAAGGACAAATCCGATTCTCGCGGCAGATCTGAGAATACCAGGTCAGGTTCTAGGGACAAATCCAATACTCGCGGCAGATCTGAGAATACCAGGTCAGGTTCTAGGGACAAATCCGATTCTCGCGGAAGATCTGAGAATACCAGGTCAGGTACTAGGGACAAATCTGATTCTCGCAGCAGAACAGAGAATGCAAGGTCAGGTACGAAATCGGGTAAACAATCAACGCCATCAAAGTTTACGAAAAAAGGATTTACCGTTTCAAAATCTGTAAAATCTTCCAGTACAAGTAGCTTCAAGAAAGCTTCTTCAGATGATAAGCGAACGGGTAAAAGAACCACTGCCTCCAAATCTACAGGTTCTAAACTTAGTGTTGTCGGATTTAGGGGGAAGAATGCATCATCCTCAGATAAGAGACAAACATTTTAG	2055	0.4394	MAIATRKTLFTLSSSITFPSRFSLFKLSQNPSPLFPKRFTPFSSLTTTPQSSPSLLSDPDQEKHSFLLEKLRIRHLKGGSRNDERVVRKVEGVKKKKEGVDEEDGGGVGSFEGLGLGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQMNGLVLKPKRPRAVVLCPTRELSEQVFRVAKAISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKITSLVTKKDYSLATKIEEAIKKNENLEAITKESVRMDVTRNQITEQRRKNKNVVKPSKVRDISDSRTSSKNTRLGTKDKSDSRGRSENTRSGSRDKSNTRGRSENTRSGSRDKSDSRGRSENTRSGTRDKSDSRSRTENARSGTKSGKQSTPSKFTKKGFTVSKSVKSSSTSSFKKASSDDKRTGKRTTASKSTGSKLSVVGFRGKNASSSDKRQTF*	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g1124	684	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	352	504	IPR001650	-
	Mtr6g1124	684	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	483	IPR027417	-
	Mtr6g1124	684	SMART	ultradead3	128	337	IPR014001	-
	Mtr6g1124	684	MobiDBLite	consensus disorder prediction	507	684	-	-
	Mtr6g1124	684	Pfam	DEAD/DEAH box helicase	133	316	IPR011545	GO:0003676\|GO:0005524
	Mtr6g1124	684	MobiDBLite	consensus disorder prediction	656	684	-	-
	Mtr6g1124	684	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	109	137	IPR014014	GO:0003724
	Mtr6g1124	684	Gene3D	-	71	328	IPR027417	-
	Mtr6g1124	684	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	34	539	-	-
	Mtr6g1124	684	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	140	327	IPR014001	-
	Mtr6g1124	684	MobiDBLite	consensus disorder prediction	609	642	-	-
	Mtr6g1124	684	Pfam	Helicase conserved C-terminal domain	352	463	IPR001650	-
	Mtr6g1124	684	MobiDBLite	consensus disorder prediction	508	608	-	-
	Mtr6g1124	684	CDD	SF2_C_DEAD	340	472	-	-
	Mtr6g1124	684	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	34	539	-	-
	Mtr6g1124	684	CDD	DEADc	120	319	-	-
	Mtr6g1124	684	Gene3D	-	334	566	IPR027417	-
	Mtr6g1124	684	SMART	helicmild6	381	463	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g1124	Mtr-Chr6	15484481	15492119	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g1124	108	485	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.534	2.90e-41	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g1124	-		-	mtr:MTR_6g039840	1224.92