Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1116 ATGGATTTATCGTTTGACCTTCAGAAACGGCAGATGGATCCACACCATTCGACCATTACACATAAACCCTTGTTCCAACTGGACGCATACCCATCCCGTGTCCAGGATGACCTTGCCTCTGAAGTTGGTATGGCAGGATGTAATTTGGAGCAACTGCAGATCGCATACCTGGTATCAATTGTTGCTGGTATCCGTATCAAGTTGTTTCATCACCAAAGATCGTGTTCCAGCAGCTTGACCAGTGCTGGAAGATTTGAGAATTCTTCTTTGTACGTCGGTGATCCAAGGAACGTAAATGATGCGCAGCTGTATGATCTGTTCAGCCAGATTGCCCCTGATTCTGTTAGGGTTTGCAGAGATCAGATGACCAGTCATCTCTTATATGGCTATGTTAACTACTCCAACGCTCGTGATGCTGCTAATGCGATGAAGAGTTTGAACTATGTCTCTGAACGGAAAGCCCATTCGTATTATGTTTCTCATCGAGACCCTCTCATTCGTAAAACTGGATTTGCAAATCTGTTCATTAAGAATCTAGAAACATCAATAGATAACAAGGCATTGCATGAAACTTCTGTTTTTGGAAATGTGCTTTCTTGTAAGGTTGCTATGGATAGCAATGGTCATTCTAAGGGACATGGTTTTGTTCAATTTGACAATGATCAGTCTGCAAAAAATGCTATTGAAAAGTTGGATGGCATGCTGATGAATGATAAGAAAGTTTATGTAGTATTTGTTCGGCGTCAAGAAAGGTCATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAATCATACACTGATGAGGACCTTAAGCAGCTTTTCACTTTTGGTGTAATAACAAGTGTTGATATGAAACATGAAAATGGTAACTCTAAGTTTTGGTTTGTGAATTTCCAAAGCTCAGATTCAGCAGCTACTGCTGTTGAGAAGTTGAATGGGAGCACAACGAATGATGGGAAGGTTTTATTTGTCGGGAGGGCTCAAAAATCGGAAAGGGAGGCAGAGTTGAAAGCTTTCTTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTCAAGGTGCTAATTTATACTGAAAAACATTGATAAGAGTCTTAATGAAGAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTCTGATGCTCGTGGACGCAGCAAGGGCGTCGGTTTTGTTGCTTACACACCTGAGGAAGCGAGCAAAGCTATCAATGAAATGAATGGGAAGATGATTGGACAGAAGCCAGTATATGTTTCTGTGGCCCAACGCAAAGAAGAAAGGAAAGCTCAATTGCAGAAACATGCTTACTTTCATTTTTTTGGCACATTTTCTGCAATTCAAGTATCGGGTGGAAATGCTGGATACCATTCAAGTGTACAAAGACTTGCTCCGCAACAATTTTATTATGAGCAAGGTACATTTGTCTCATGGCGCCTCAGCCAAACGATACAGTTTCCAGCCACAGTTCATGTCAGTGTGGGAACTGGCTTTGTTACTCCAAATTACTTGCTGCCATACCACCTTCAGAGGCAGGGACATCCGGATACGATGGGTGGGCGTCCAGCTGGTAACTTCCAGCAAGTCCGACAGAAGAAAAACCAAATGCTACCTCGTAACCCCAATCAAGGCTTAATACAATGATCAAAATGGCGTGGGTATGTCTTTAGATCCCGGAAGTCAATGATGGATCCATCTGCGAGTGCTGCAACCTCCACTGGCAATCACCATCACGGTCCATTGTCTAACAACTCGCTTGCTTCAGCTTTGGCTTCTGCTTCTCAAGAAAATCAACATCGGATGCTGGAAGAACATTTACATCCTCTGGTGGGTCGTCTTGCACCAACCATTCAGACTGCAAAGGTGACAAGAATGTTGCTGGAAATGGACCAGTCAGAGGTCATTCATCTGATCGAGTCACCTGAGGAGCTGAAGATGAAGGTTGCTGAGGCTATGCGATTCCTTCGTGATGCTTCACAAGGTCCTGCAGTTGGTGATAATGCTCATAATCACTTAGTGAATGAAATAATCTTAGATGTTGTTTTGGATACTTGTCAGGATTTTCCCCCTTTTCTATTAGGATTTTTGTATTAA 2118 0.4212 MDLSFDLQKRQMDPHHSTITHKPLFQLDAYPSRVQDDLASEVGMAGCNLEQLQIAYLVSIVAGIRIKLFHHQRSCSSSLTSAGRFENSSLYVGDPRNVNDAQLYDLFSQIAPDSVRVCRDQMTSHLLYGYVNYSNARDAANAMKSLNYVSERKAHSYYVSHRDPLIRKTGFANLFIKNLETSIDNKALHETSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVVFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFTFGVITSVDMKHENGNSKFWFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKSEREAELKAFFEQEKLKRYEKFKVLIYTEKH**ES**RKLKELFSEFGTITSCKVMSDARGRSKGVGFVAYTPEEASKAINEMNGKMIGQKPVYVSVAQRKEERKAQLQKHAYFHFFGTFSAIQVSGGNAGYHSSVQRLAPQQFYYEQGTFVSWRLSQTIQFPATVHVSVGTGFVTPNYLLPYHLQRQGHPDTMGGRPAGNFQQVRQKKNQMLPRNPNQGLIQ*SKWRGYVFRSRKSMMDPSASAATSTGNHHHGPLSNNSLASALASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAMRFLRDASQGPAVGDNAHNHLVNEIILDVVLDTCQDFPPFLLGFLY* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1116 700 SUPERFAMILY RNA-binding domain, RBD 173 332 IPR035979 GO:0003676
Mtr6g1116 700 PANTHER RNA BINDING PROTEIN 81 666 - -
Mtr6g1116 700 MobiDBLite consensus disorder prediction 568 587 - -
Mtr6g1116 700 SUPERFAMILY RNA-binding domain, RBD 367 436 IPR035979 GO:0003676
Mtr6g1116 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 147 IPR000504 GO:0003723
Mtr6g1116 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 321 IPR000504 GO:0003723
Mtr6g1116 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Mtr6g1116 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 421 IPR000504 GO:0003723
Mtr6g1116 700 Gene3D - 246 341 IPR012677 -
Mtr6g1116 700 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 585 663 IPR002004 GO:0003723
Mtr6g1116 700 SUPERFAMILY RNA-binding domain, RBD 77 148 IPR035979 GO:0003676
Mtr6g1116 700 Pfam Poly-adenylate binding protein, unique domain 593 657 IPR002004 GO:0003723
Mtr6g1116 700 Gene3D - 171 245 IPR012677 -
Mtr6g1116 700 SMART rrm1_1 89 157 IPR000504 GO:0003723
Mtr6g1116 700 SMART rrm1_1 173 244 IPR000504 GO:0003723
Mtr6g1116 700 SMART rrm1_1 355 424 IPR000504 GO:0003723
Mtr6g1116 700 SMART rrm1_1 258 328 IPR000504 GO:0003723
Mtr6g1116 700 SUPERFAMILY PABC (PABP) domain 535 663 IPR036053 GO:0003723
Mtr6g1116 700 Gene3D - 359 443 IPR012677 -
Mtr6g1116 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 428 IPR000504 GO:0003723
Mtr6g1116 700 SMART rrm2_1 173 244 IPR003954 GO:0003676
Mtr6g1116 700 SMART rrm2_1 258 327 IPR003954 GO:0003676
Mtr6g1116 700 Gene3D - 583 663 - -
Mtr6g1116 700 PANTHER POLYADENYLATE-BINDING PROTEIN 81 666 - -
Mtr6g1116 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 248 IPR000504 GO:0003723
Mtr6g1116 700 SMART poly_2 597 661 IPR002004 GO:0003723
Mtr6g1116 700 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 88 659 IPR006515 GO:0003723
Mtr6g1116 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 332 IPR000504 GO:0003723
Mtr6g1116 700 CDD RRM2_I_PABPs 170 243 IPR045305 -
Mtr6g1116 700 Gene3D - 70 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1116 Mtr-Chr6 15421337 15425978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1116 87 659 Eukaryotic Initiation Factors Gene Family AT1G22760 46.850 7.08e-148 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1116 K13126 - gmx:100783163 574.318