Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1115 ATGGCAGCAGTGGTTTCATCACCAAAGATCGTTGTTCCAGCAGCTTTGACCGGTACTGGAAGATTTGAGACCGCTTCCTTATACGTTGGTGATCTCGAAAGGAACGTCAATGAGGGCCAGCTTTATGATCTGTTCAGTCAGATTGCACCAGTGCTTTCTGCTAGGGTTTGCCGGGATCAGATGACGCAGTCATCTCTTGGATATGGCTATGTTAACTACTCCAACGCTCGTGATGCTGCTGATGCGATGGAGAATTTGAACTACTATACTCTGAACGGAAAGCCCATTCGTATTATGTTTTCTCATCGAGACCCTCTCATTCGTAAAACTGGATTTGCAAATCTGTTCATTAAGAATCTAGAAACATCAATAGATAACAAGGCATTGCATGAAACTTTTTCTGTTTTTGGAAATGTGCTTTCTTGTAAGGTTGCTATGGATAGCAATGGTCATTCTAAGGGACATGGTTTTGTTCAATTTGACAATGATCAGTCTGCAAAAAATGCTATTGAAAAGTTGGATGGCATGCTGATGAATGATAAGAAAGTTTATGTAGGGTATTTTGTTCGGCGTCAAGAAAGGTCATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAATCATACACTGATGAGGACCTTAAGCAGCTTTTCAACCCTTTTGGTGTAATAACAAGTGCTGTGATCATGAAACATGAAAATGGTAACTCTAAATGTTTTGGTTTTGTGAATTTCCAAAGCTCAGATTCAGCAGCTACTGCTGTTGAGAAGTTGAATGGGAGCACAACGAATGATGGGAAGGTTTTATTTGTCGGGAGGGCTCAGAAAAAATCGGAAAGGGAGGCAGAGTTGAAAGCTTTCTTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTTCAAGGAGCTAACTTATATTTGAAAAACATTGATAAGAGTCTTAATGAAGAAAAACTGAAGGAGCAGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTCTGATGCTCGTGGACGCAGCAAGGGCGTCGGTTTTGTTGCTTTTACCACACCGGAGGAAGCGAGCAAAGCTATCAATGAAATGAATGGGAAGATGATTGGACAGAAGCCCTTATATGTTTCTGTGGCCCAGCGGAAAGAAGATCGGAAAGCTCAGTTGCAGGCGTATTTTTCTGCAATTCAAGTATCGGGTGGAAATGCTGGATACCATTCAAGTGTACAAAGACTTGCTCCGCAACAAATTTATTATGAGCAAGGTACATTTGGTCTCATGGCGCCTCAGCCAAACGGATACGGTTTCCAGCCACAGTTCATGTCAGGTGTGGGAACTGGCTTTGTTACTCCAAATTACTTGCTGCCATATCACCTTCAGAGGCAGGGACATCCGGGGAATAGGATGGGTGGGCGTGCAGCTGGTAACTTCCAGCAAGTCCGACAGAAGAAAAACCAAATGCGACCTCATAACCCCAACCAAGGGCTTCAAAATGGTGTGGGTATGTCTGTAGATCCCGGAAATCAAATGATGGATCCGTCTGGGAGTGCTGCAACCTCCACTGGCAATCACCATCATGGTCCATTGTCTAACAACTCGCTTGCTTCAGCTTTGGCTTCTGCTTCTCAAGAAAATCAACATCGGATGCTGGAAGAACATTTACATCCTCTGGTGGGTCGTCTTGCACCAACCAATCAGACTGCAAAGGTGACAAGAATGTTGCTTGAAATGGACCAGTCAGAGGTCATCCATCTGATCGAGTCACCTGAGGAGCTGAAGATGAAGGTTGCTGAGGCTATGCGATTCCTTCGTGAAGCTTCACAAGGTCCTGCAGTTGGTGATAAGATCGACTCATAA 1857 0.433 MAAVVSSPKIVVPAALTGTGRFETASLYVGDLERNVNEGQLYDLFSQIAPVLSARVCRDQMTQSSLGYGYVNYSNARDAADAMENLNYYTLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFNPFGVITSAVIMKHENGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKEQFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAINEMNGKMIGQKPLYVSVAQRKEDRKAQLQAYFSAIQVSGGNAGYHSSVQRLAPQQIYYEQGTFGLMAPQPNGYGFQPQFMSGVGTGFVTPNYLLPYHLQRQGHPGNRMGGRAAGNFQQVRQKKNQMRPHNPNQGLQNGVGMSVDPGNQMMDPSGSAATSTGNHHHGPLSNNSLASALASASQENQHRMLEEHLHPLVGRLAPTNQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAMRFLREASQGPAVGDKIDS* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1115 618 Gene3D - 528 609 - -
Mtr6g1115 618 CDD RRM1_I_PABPs 26 105 - -
Mtr6g1115 618 Gene3D - 112 187 IPR012677 -
Mtr6g1115 618 SUPERFAMILY PABC (PABP) domain 451 608 IPR036053 GO:0003723
Mtr6g1115 618 SMART poly_2 542 606 IPR002004 GO:0003723
Mtr6g1115 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mtr6g1115 618 SMART rrm2_1 201 273 IPR003954 GO:0003676
Mtr6g1115 618 SMART rrm2_1 114 186 IPR003954 GO:0003676
Mtr6g1115 618 SMART rrm2_1 305 377 IPR003954 GO:0003676
Mtr6g1115 618 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 530 608 IPR002004 GO:0003723
Mtr6g1115 618 Gene3D - 295 391 IPR012677 -
Mtr6g1115 618 Pfam Poly-adenylate binding protein, unique domain 538 602 IPR002004 GO:0003723
Mtr6g1115 618 Gene3D - 21 111 IPR012677 -
Mtr6g1115 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mtr6g1115 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 374 IPR000504 GO:0003723
Mtr6g1115 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 267 IPR000504 GO:0003723
Mtr6g1115 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Mtr6g1115 618 SUPERFAMILY RNA-binding domain, RBD 302 406 IPR035979 GO:0003676
Mtr6g1115 618 CDD RRM3_I_PABPs 199 279 - -
Mtr6g1115 618 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Mtr6g1115 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Mtr6g1115 618 Gene3D - 189 294 IPR012677 -
Mtr6g1115 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 381 IPR000504 GO:0003723
Mtr6g1115 618 PANTHER POLYADENYLATE-BINDING PROTEIN 21 609 - -
Mtr6g1115 618 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mtr6g1115 618 SMART rrm1_1 201 274 IPR000504 GO:0003723
Mtr6g1115 618 SMART rrm1_1 305 377 IPR000504 GO:0003723
Mtr6g1115 618 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mtr6g1115 618 CDD RRM2_I_PABPs 111 187 IPR045305 -
Mtr6g1115 618 PANTHER RNA BINDING PROTEIN 21 609 - -
Mtr6g1115 618 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 604 IPR006515 GO:0003723
Mtr6g1115 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mtr6g1115 618 MobiDBLite consensus disorder prediction 485 532 - -
Mtr6g1115 618 SUPERFAMILY RNA-binding domain, RBD 195 284 IPR035979 GO:0003676
Mtr6g1115 618 CDD RRM4_I_PABPs 303 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1115 Mtr-Chr6 15396453 15400521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1115 25 604 Eukaryotic Initiation Factors Gene Family AT1G22760 53.589 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1115 K13126 - gmx:100783163 768.459