Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1104 ATGTCACGTTACAGAGGGCCTCGTTTCAAAAAAATACGTCGTCTGGGGGCTTTACCAGGACTAACTAGTAAAGGGCCTACAGTTGGAAGCGAACTTAAAAACCAATCGCGCTCGAGTAAAAAGTCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAAATACGTTCGTATCGCTGGAAAAGCGAAAGGTTCAACCGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGTTGCAAACCCGAAGATATTATTACAGCGAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTGAATCAGCCCCCCGCGAAAAATTGCCAATCCATTTGACTCTTGATCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATTAATGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTTAA 606 0.3696 MSRYRGPRFKKIRRLGALPGLTSKGPTVGSELKNQSRSSKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPEDIITAKDEQKSRTLIQNSLESAPREKLPIHLTLDPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQT* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1104 201 SUPERFAMILY Alpha-L RNA-binding motif 3 199 - -
Mtr6g1104 201 SMART Ribosomal_S4_2 3 88 IPR001912 GO:0019843
Mtr6g1104 201 Gene3D - 88 184 IPR036986 GO:0003723
Mtr6g1104 201 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 200 IPR022801 -
Mtr6g1104 201 SMART s4_6 89 153 IPR002942 GO:0003723
Mtr6g1104 201 Pfam Ribosomal protein S4/S9 N-terminal domain 3 88 IPR001912 GO:0019843
Mtr6g1104 201 MobiDBLite consensus disorder prediction 18 44 - -
Mtr6g1104 201 Hamap 30S ribosomal protein S4 [rpsD]. 1 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
Mtr6g1104 201 TIGRFAM rpsD_bact: ribosomal protein uS4 3 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
Mtr6g1104 201 MobiDBLite consensus disorder prediction 27 41 - -
Mtr6g1104 201 ProSitePatterns Ribosomal protein S4 signature. 87 111 IPR018079 GO:0019843
Mtr6g1104 201 CDD S4 89 148 - -
Mtr6g1104 201 Pfam S4 domain 89 136 IPR002942 GO:0003723
Mtr6g1104 201 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 199 - -
Mtr6g1104 201 ProSiteProfiles S4 RNA-binding domain profile. 89 152 - -
Mtr6g1104 201 PANTHER 30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1104 Mtr-Chr6 15242122 15243140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1104 85 134 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 42.000 1.04e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1104 K02986 - gmx:3989263 371.703