Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1084 ATGAAAAGAAGAATCACAAAGCTTCTAAGCCTCTCATTTTCATCTCTACAATCTCAAATTCAAAATCATCACCAACCACTCTCAAAATCACTACCACCAACTTCTTCTTTCTCAACATTTTCCAACTCTGAAAGAGATTCACTCATTCTCCAACAGTTCAAACAAAGAAAACTCAAAGGGTCATCAAATTCAGTTTTAAATTCAAGTTTTGATGATACTAATGATGAGAAAATGATTCAAAATGGTTTGAAAAATGGTACTATGGTGGTTGGTGGCTTTAAGGAGTTGGGTATGAGTGATGAGCTGATTGAGGTTATGGAAGAGATTGGAGAGTTTGTGCCAAGTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGATGGGAAGAGTTTGTTGTTGAGTTCACCTTCTCAGCATGATAGGACTTTGGCTTACTTGTTGCCTCTTATTCAGATGCTGCGACGAGATAGAGAGTTGCTTGGTTCAAATTCAAAGTATCCTCGAGCCGTTGTTCTTTGTGCTTCAGAGGAGAAAGTTGAACAGTGTTTTAATGCTGCAAGATATATCATCCATAATGCAGAAGTGAAGTCCGCAAAGAATCGTGCTTCATCAGATACCGAAAAGTCAAATTCCTCAATTGGCTTGATGATTGGAACTCCTCATGAGATCCTTCAATACATTGAAGAGGGGACTATTGTTCCTGCTGAATTAAAATGCTTGGTATTGGACGAAGCAGATTCCATGCTTGGTAGCAGCAACCTTGGTCCTGAAATTAATAAAATTATCAGACCATTACAACATAATGAATCAAAATCCAGTGTCAAAAGATTGCAAACGATCATGGCAATTTCAACTATAGCTGAGGTTTTGGGTGAAGATTCGCCGATTGTGAAACGACTTGAGCGTGATCATGCCGGAAATATTTCTGCATTGTCTGTGGAAATGGAAGAAACAGAAGTTTTTCATTTGACAGAGTCTCTGGATGCTCTTAAGAAAAAATTGGAAGAAGCCATGAATTCCCTTTAG 1026 0.3811 MKRRITKLLSLSFSSLQSQIQNHHQPLSKSLPPTSSFSTFSNSERDSLILQQFKQRKLKGSSNSVLNSSFDDTNDEKMIQNGLKNGTMVVGGFKELGMSDELIEVMEEIGEFVPSEIQCVVIPTILDGKSLLLSSPSQHDRTLAYLLPLIQMLRRDRELLGSNSKYPRAVVLCASEEKVEQCFNAARYIIHNAEVKSAKNRASSDTEKSNSSIGLMIGTPHEILQYIEEGTIVPAELKCLVLDEADSMLGSSNLGPEINKIIRPLQHNESKSSVKRLQTIMAISTIAEVLGEDSPIVKRLERDHAGNISALSVEMEETEVFHLTESLDALKKKLEEAMNSL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1084 341 Coils Coil 320 341 - -
Mtr6g1084 341 SMART ultradead3 110 303 IPR014001 -
Mtr6g1084 341 Gene3D - 292 341 - -
Mtr6g1084 341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 304 IPR014001 -
Mtr6g1084 341 Gene3D - 52 291 IPR027417 -
Mtr6g1084 341 Pfam DEAD/DEAH box helicase 116 283 IPR011545 GO:0003676|GO:0005524
Mtr6g1084 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 286 IPR027417 -
Mtr6g1084 341 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 21 341 - -
Mtr6g1084 341 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 21 341 - -
Mtr6g1084 341 SUPERFAMILY PABC (PABP) domain 289 339 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1084 Mtr-Chr6 14978176 14981502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1084 92 315 Eukaryotic Initiation Factors Gene Family AT5G11200 21.739 3.13e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1084 - - gmx:100800575 413.305