Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1082 ATGAAGAGTTTGAACTATGTTACTCTGAACGGAAAGCCCATTCGTATTATGTTTTCTCATCGAGACCCTCTCATTCGTAAAACTGGATTTGCAAATCTGTTCATTAAGAATCTAGAAACATCAATAGATAACAAGGCATTGCATGAAACTTTTTCTGTTTTTGGAAATGTGCTTTCTTGTAAGGTTGCTATGGATAGCAATGGTCATTCTAAGGGACATGGTTTTGTTCAATTTGACAATGATCAGTCTGCAAAAAATGCTATTGAAAAGTTGGATGGCATGCTGATGAATGATAAGAAAGTTTATGTAGGGTATTTTGTTCGGCGTCAAGAAAGGTCATCACCTAAGTTCACTAATGTGTATGTGAAAAACCTTTCTGAATCATACACTGATGAGGACCTTAAGCAGCTTTTCAACCCTTTTGGTGTAATAACAAGTGCTGTGATCATGAAACATGAAAATGGTAACTCTAAATGTTTTGGTTTTGTGAATTTCCAAAGCTCAGATTCAGCAGCTACTGCTGTTGAGAAGTTGAATGGGAGCACAACGAATGATGGGAAGGTTTTATTTGTCGGGAGGGCTCAGAAAAAATCGGAAAGGGAGGCAGAGTTGAAAGCTTTCTTTGAGCAAGAAAAGCTAAAAAGATATGAGAAATTACAAGGTGCTAATTTATACCTGAAAAACATTGATAAGAGTCTTAATGAAGAAAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACAATAACATCTTGCAAGGTAATGTCTGATGCTCGTGGACGCAGCAAGGGCGTCGGTTTTGTTGCTTTTACTACACCTGAGGAAGCGAGCAAAGCTATCAATGAAATGAATGGGAAGATGATTGGACAGAAGCCAGTATATGTTTCTGTGGCCCAACGCAAAGAAGAAAGGAAAGCTCAATTGCAGGCACATTTTTCTGCAATTCAAGTATCGGGTGGAAATGCTGGATACCATTCAAGTGTACAAAGACTTGCTCCGCAACAATTTTATTATGAGCAAGGTACATTTGGTCTCATGGCGCCTCAGCCAAACGGATACAGTTTCCAGCCACAGTTCATGTCAGGTGTGGGAACTGGCTTTGTTACTCCAAATTACTTGCTGCCATACCACCTTCAGAGGCAGGGACATCCGGGGAATACGATGGGTGGGCGTCCAGCTGGTAACTTCCAGCAAGTCCGACAGAAGAAAAACCAAATGCTACCTCGTAACCCCAATCAAGGGCTTAAATACAATGATCAAAATGGCGTGGGTATGTCTTTAGATCCCGGAAGTCAAATGATGGATCCATCTGCGAGTGCTGCAACCTCCACTGGCAATCACCATCACGGTCCATTGTCTAACAACTCGCTTGCTTCAGCTTTGGCTTCTGCTTCTCAAGAAAATCAACATCGGATGCTGGAAGAACATTTACATCCTCTGGTGGGTCGTCTTGCACCAACCATTCAGACTGCAAAGGTGACAAGAATGTTGCTGGAAATGGACCAGTCAGAGGTCATTCATCTGATCGAGTCACCTGAGGAGCTGAAGATGAAGGTTGCTGAGGCTATGCGATTCCTTCGTGATGCTTCACAAGGTCCTGCAGTTGGTGATAAGCTCATAATCACTTAG 1626 0.42 MKSLNYVTLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRRQERSSPKFTNVYVKNLSESYTDEDLKQLFNPFGVITSAVIMKHENGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKLQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAINEMNGKMIGQKPVYVSVAQRKEERKAQLQAHFSAIQVSGGNAGYHSSVQRLAPQQFYYEQGTFGLMAPQPNGYSFQPQFMSGVGTGFVTPNYLLPYHLQRQGHPGNTMGGRPAGNFQQVRQKKNQMLPRNPNQGLKYNDQNGVGMSLDPGSQMMDPSASAATSTGNHHHGPLSNNSLASALASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAMRFLRDASQGPAVGDKLIIT* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1082 541 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 1 526 IPR006515 GO:0003723
Mtr6g1082 541 SUPERFAMILY PABC (PABP) domain 371 529 IPR036053 GO:0003723
Mtr6g1082 541 MobiDBLite consensus disorder prediction 406 454 - -
Mtr6g1082 541 Pfam Poly-adenylate binding protein, unique domain 460 524 IPR002004 GO:0003723
Mtr6g1082 541 SUPERFAMILY RNA-binding domain, RBD 11 112 IPR035979 GO:0003676
Mtr6g1082 541 CDD RRM2_I_PABPs 29 105 IPR045305 -
Mtr6g1082 541 Gene3D - 107 206 IPR012677 -
Mtr6g1082 541 Gene3D - 207 311 IPR012677 -
Mtr6g1082 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 299 IPR000504 GO:0003723
Mtr6g1082 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Mtr6g1082 541 PANTHER POLYADENYLATE-BINDING PROTEIN 1 531 - -
Mtr6g1082 541 SMART poly_2 464 528 IPR002004 GO:0003723
Mtr6g1082 541 CDD RRM3_I_PABPs 117 197 - -
Mtr6g1082 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 108 IPR000504 GO:0003723
Mtr6g1082 541 CDD RRM4_I_PABPs 221 299 - -
Mtr6g1082 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 185 IPR000504 GO:0003723
Mtr6g1082 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 101 IPR000504 GO:0003723
Mtr6g1082 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 292 IPR000504 GO:0003723
Mtr6g1082 541 Gene3D - 450 530 - -
Mtr6g1082 541 Gene3D - 30 105 IPR012677 -
Mtr6g1082 541 SUPERFAMILY RNA-binding domain, RBD 112 202 IPR035979 GO:0003676
Mtr6g1082 541 SMART rrm2_1 32 104 IPR003954 GO:0003676
Mtr6g1082 541 SMART rrm2_1 119 191 IPR003954 GO:0003676
Mtr6g1082 541 SMART rrm2_1 223 295 IPR003954 GO:0003676
Mtr6g1082 541 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 452 530 IPR002004 GO:0003723
Mtr6g1082 541 SUPERFAMILY RNA-binding domain, RBD 219 324 IPR035979 GO:0003676
Mtr6g1082 541 PANTHER RNA BINDING PROTEIN 1 531 - -
Mtr6g1082 541 SMART rrm1_1 32 104 IPR000504 GO:0003723
Mtr6g1082 541 SMART rrm1_1 119 192 IPR000504 GO:0003723
Mtr6g1082 541 SMART rrm1_1 223 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1082 Mtr-Chr6 14966398 14968910 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1082 1 526 Eukaryotic Initiation Factors Gene Family AT1G22760 52.865 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1082 K13126 - gmx:100783163 681.019