Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1076 ATGGCGATTGTTTCATCACCTAAGACAGCTGTTCCGGCTGTATTGTTGAACGGAACTGGACTGTTCGAGAATGCTTCTCTGTATGTTGGTGATCTTGAAGGGAACGTGAACGAGGCACAGCTTTATGAATTGTTCAATCAGATAGGTCAGGTTGTTTCAATCAGGGTTTGTAGGGATCAGACGATGCGGTTGTCTCTTGGCTATGCTTATGTCAATTTCTCCAATGCTCGTGATGCTGCTAATGCGATAGAACATTTGAATTACACTCCTTTGAATGGGAAGCCAATTCGTATCATGTTTTCTCATCGAGATCCTAGTATCAGGAAAACTGGATTTGCAAATGTGTTCGTTAAGAATCTTGACACGTCAATAGATAACAAGGTGTTGCATGATACTTTTGCTACATTTGGAACCGTACTTTCTTGCAAGGTGGCACTTGATAGCAATGGTAAATCTTTGGGATATGGTTTTGTACAATATGACAATCACGAGTCTGCAAAGTGTGCCATTGAAAAATTGGATGGTATGCTGATAAAAGATAAGAAAGCTTTTGTAGGGTATTTTATTCGGCGTCAAGAAAGGTCGGAAAATGGATCTCCTAAGTTCACTAATGTGTATGTGAAAAACCTTTTAGAAACAGATACCGATGAGGATCTTAAAAAGCTTTTCAGCACATATGGTGTAATAACAAGTGCTGTGATCATGAAAGATGAGAATGGAAACTCCAAATGTTTTGGTTTTGTGAATTTTCAAAGCCCTGATTCAGCAGCTGCTGCAGTTGAGAAGTTGAATGGCACTACAACCAACGATGGGAAGGTTTTATATGTAGGAAGGGCTCAAAGGAAATGTGAAAGGGAGGCAGAGTTGAGAGCTAAGTTTGAACAAGAAAAGATAAAAAGATATGAAAAATTACAAGGTGCCAATTTATACCTGAAAAACCTTGATGAGAGTATTAACGATGAGAAACTGAAGGAGATGTTTTCTGAGTTTGGAACAATAACTTCTTGCAAGGTAATGTTTGATGCTCATGGCCATAGCAAGGGCTTCGGTTTTGTTGCATTTTCCACATCAGAGGAAGCGAGTAAAGCTATCAATGGAATGAGTGGAAAGATAATTGGACAGAAGCCGTTGTACGTTGTTGTGGCTCAACGCAAAGAAGATAGGAAAACTCGTTTGCAGGCTCAATTTTCTCAAATCAATGTTTCGGGTGGAATCACATCTTTTCCTGCAAGAATTGCTGGATATCATCAAAGTGCTCCAAGACTTGCTCCTCAACAATTGTATTATGGTCAAGGTACACCTCGTCTCATGCTGCCTCAACCAGCTGGATACGGATACCAGCAACAATTCATACCCGGTATGCAATCTGGAGTTGCTCCAAATTACATCATGCCATACCACCCTCAGAGGCACGGTCATACCGGACATAGGATGCCTCCAGTTGGTAACTTCCAACAAGTGCAGCAGAACCAGGTGCTACCTCGCAACTCGGACCAAGGGTTTAGATATAATGGTCGAAATAGTGTGGATCCATCTGCTGTTTCTGAAGGTCAAATGATAGATCCATCCATACAAAATCATGGTGCCTTGTCTAATAATTCACTTCCCTCAACTTTGGCTTCTGTTACTCTGGAAAATCAAAACCGGATGTTGGGTGAACAATTATATCCTCTTGTGGGTTGTCTTACACCAAACAATCAGACAGCCAAGGTGACAGGAATGTTGTTGGAATTGGACAAGTCAGAGGTTATCCATCTGATTAAGTCACCTGAAGAATTGAAGATGAAAGTGTCCGAGGCAATGGAAGCCCTTCGTTTTGTTTCATCGGGTCCTGCCTGCAGATCATGA 1848 0.4129 MAIVSSPKTAVPAVLLNGTGLFENASLYVGDLEGNVNEAQLYELFNQIGQVVSIRVCRDQTMRLSLGYAYVNFSNARDAANAIEHLNYTPLNGKPIRIMFSHRDPSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFVQYDNHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRLQAQFSQINVSGGITSFPARIAGYHQSAPRLAPQQLYYGQGTPRLMLPQPAGYGYQQQFIPGMQSGVAPNYIMPYHPQRHGHTGHRMPPVGNFQQVQQNQVLPRNSDQGFRYNGRNSVDPSAVSEGQMIDPSIQNHGALSNNSLPSTLASVTLENQNRMLGEQLYPLVGCLTPNNQTAKVTGMLLELDKSEVIHLIKSPEELKMKVSEAMEALRFVSSGPACRS* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1076 615 CDD RRM1_I_PABPs 26 105 - -
Mtr6g1076 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 531 609 IPR002004 GO:0003723
Mtr6g1076 615 Gene3D - 107 193 IPR012677 -
Mtr6g1076 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mtr6g1076 615 PANTHER RNA BINDING PROTEIN 21 607 - -
Mtr6g1076 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 270 IPR000504 GO:0003723
Mtr6g1076 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 182 IPR000504 GO:0003723
Mtr6g1076 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Mtr6g1076 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Mtr6g1076 615 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mtr6g1076 615 SMART rrm1_1 204 277 IPR000504 GO:0003723
Mtr6g1076 615 SMART rrm1_1 308 380 IPR000504 GO:0003723
Mtr6g1076 615 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mtr6g1076 615 SUPERFAMILY PABC (PABP) domain 459 607 IPR036053 GO:0003723
Mtr6g1076 615 Gene3D - 17 106 IPR012677 -
Mtr6g1076 615 Gene3D - 285 394 IPR012677 -
Mtr6g1076 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mtr6g1076 615 SUPERFAMILY RNA-binding domain, RBD 24 194 IPR035979 GO:0003676
Mtr6g1076 615 PANTHER POLYADENYLATE-BINDING PROTEIN 21 607 - -
Mtr6g1076 615 CDD RRM3_I_PABPs 202 282 - -
Mtr6g1076 615 SMART rrm2_1 308 380 IPR003954 GO:0003676
Mtr6g1076 615 SMART rrm2_1 204 276 IPR003954 GO:0003676
Mtr6g1076 615 SMART rrm2_1 114 184 IPR003954 GO:0003676
Mtr6g1076 615 SMART rrm2_1 26 99 IPR003954 GO:0003676
Mtr6g1076 615 Coils Coil 276 304 - -
Mtr6g1076 615 SUPERFAMILY RNA-binding domain, RBD 304 400 IPR035979 GO:0003676
Mtr6g1076 615 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 605 IPR006515 GO:0003723
Mtr6g1076 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Mtr6g1076 615 Gene3D - 529 607 - -
Mtr6g1076 615 Pfam Poly-adenylate binding protein, unique domain 539 604 IPR002004 GO:0003723
Mtr6g1076 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Mtr6g1076 615 CDD RRM4_I_PABPs 306 384 - -
Mtr6g1076 615 CDD RRM2_I_PABPs 111 187 IPR045305 -
Mtr6g1076 615 Gene3D - 194 284 IPR012677 -
Mtr6g1076 615 SUPERFAMILY RNA-binding domain, RBD 198 288 IPR035979 GO:0003676
Mtr6g1076 615 SMART poly_2 543 607 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1076 Mtr-Chr6 14905260 14911008 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1076 11 606 Eukaryotic Initiation Factors Gene Family AT1G22760 53.035 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1076 K13126 - gmx:100783163 831.247