Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1019 ATGTCCTTGTTAACTGTGGCTCATCAAAGAGGTTCAGGTGAGTTCACCGGGTACACGGTGAAGCGCGAAGGCGACGATCACGAAGGTGGTAGCGACGACGGTGGAAGTTCTAATGCATCACAGTTGGATTTCAACCAAATGTTTTCAGGGTATAATGGTGATAGAGAGTTATCAGAAATGGTTTCAGCTCTAACACATGTTGCATCATCAGGGTCAAATCAAATGAGTAGTAATGAATGGATTCAAAGGAGTGATTTTCCTTTGATATCAAGTTTTGGAAATGCTTCATCTTCTTCTTCTTATGCTTCAAGTTCATGGAGTGGTCAAAAAAGAGGGCGTGATGAAGAAAGTAGTGGTTCTAATCAGTATATAACTCAAGCTGTTGTTCCTCCTAGACTCTTTAGAACTGTTATGGTACCTTCTCAAGAATCATCCTCATTATCATCAGTGACCGAAGAAGCTCGAACAAGTACTACCATAGCCACCTCGGCAGCGTCAGCCGCGTCATTCGAAGACTCCGGCGAGCAAAGGAGACGATACAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCACAAAGAGTATGGCTAGGAACATTCGACACAGCAGAAGCTGCAGCTAGGGCTTATGATGAAGCTGCATTGAGATTCAGAGGAAGCAGAGCAAAACTCAACTTCCCTGAAAATGTTAGATCAATTATGCCGCCGCCACCGCAACAACAACCACAACTTCAGTCTTTTCCGGCCACTGCGGTTCCTTCTGGAACACCGCAGCGGCCGGTTCAAGGAACCTCTGACATGATCAGAGACTATTTGGAATATTCTCATATTCTTCAAAGCTCTGGTGATTTTCAACTACAACAAATGCAGCAGCAACAACAATTACAAGCTTCTAATTTGGTTCAACAATGGTATTATAATTCACAAATGGCTGCACTACAATCACATTCATTGTTATCATCTTCATCACTTTCTATGAATTCTAATATGTTACCATCAACTCCTTCATTTTCACCTTCCACTCAACTTTCATCCTCCTCTGCTTCTTTTCCCCTGTTTTCTAGTCAACAAATGGGATTTTTCCGGCCGCCAGAAAACCGACCGCCTGGTGGTAGCCGTGGTGGTGGAACAGAGTTACCACCGTCGACGTGGTCAGATACTAGTGGCCATCCGCCACCACCTTATGGTTGA 1218 0.4425 MSLLTVAHQRGSGEFTGYTVKREGDDHEGGSDDGGSSNASQLDFNQMFSGYNGDRELSEMVSALTHVASSGSNQMSSNEWIQRSDFPLISSFGNASSSSSYASSSWSGQKRGRDEESSGSNQYITQAVVPPRLFRTVMVPSQESSSLSSVTEEARTSTTIATSAASAASFEDSGEQRRRYRGVRQRPWGKWAAEIRDPHKAQRVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRSIMPPPPQQQPQLQSFPATAVPSGTPQRPVQGTSDMIRDYLEYSHILQSSGDFQLQQMQQQQQLQASNLVQQWYYNSQMAALQSHSLLSSSSLSMNSNMLPSTPSFSPSTQLSSSSASFPLFSSQQMGFFRPPENRPPGGSRGGGTELPPSTWSDTSGHPPPPYG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1019 405 CDD AP2 187 238 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 SMART rav1_2 179 242 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 MobiDBLite consensus disorder prediction 99 124 - -
Mtr6g1019 405 PANTHER DNA-BINDING DOMAIN 52 371 IPR044808 GO:0003700|GO:0009873
Mtr6g1019 405 MobiDBLite consensus disorder prediction 363 405 - -
Mtr6g1019 405 MobiDBLite consensus disorder prediction 144 170 - -
Mtr6g1019 405 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 MobiDBLite consensus disorder prediction 246 272 - -
Mtr6g1019 405 Gene3D AP2/ERF domain 178 238 IPR036955 GO:0003700|GO:0006355
Mtr6g1019 405 MobiDBLite consensus disorder prediction 33 50 - -
Mtr6g1019 405 MobiDBLite consensus disorder prediction 144 178 - -
Mtr6g1019 405 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 Pfam AP2 domain 179 228 IPR001471 GO:0003700|GO:0006355
Mtr6g1019 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 52 371 - -
Mtr6g1019 405 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677
Mtr6g1019 405 MobiDBLite consensus disorder prediction 253 272 - -
Mtr6g1019 405 MobiDBLite consensus disorder prediction 14 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1019 Mtr-Chr6 13842075 13844969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1019 167 240 AP2-EREBP Transcription Factor Family AT5G61890 76.000 2.53e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr6g1019 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1019 - - mtr:MTR_6g037610 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1019 6 13842075 13844969 Mtr1g3635 1 47974650 47977484 PCT