Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1015 ATGGCTGAACAATCCAAGGTCATTCATGTTCGAAATGTCGGGCACGAGATATCTGAAAACGATTTGCTTCAGTTATTTCAGCCTTTTGGAGTCGTAACAAAGCTTGTGATGTTGCGTGCTAAAAATCAGGCACTTGTACAAATGCAAGATGTTGCTTCTGCTGATAGTGCTATACAGTTCTATATAAATTCTCAACCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCTCATCGAGAACTGACGACAATGGATCAAAATCAAGGACGAGAAGATGAGCCAAATCGAATTCTCTTAGTTACGGTTCATCAAGTGCTGTATCCTATGACTGTGGATGTTCTACAGCAAGTATTTTCTCCTCATGGATTTGTGGAAAAGATTGTGACATTTCAGAAGTCAGCTGGGTTTCAAGCTCTCATCCAGTACGAGACTCGTCAGAGTGCTGTGACTGCCAGAGGTGCTCTGCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGACCGGTCAAGGGACTTTACCAACCCAAATCTGCCTACTGATCAGAAAGGCCGACCTTCACAGGCTGGATACGGTGATGCAGGAAATTATGGGGGAATTCAAGGTTCTGGACCCAGACAAGCTGGATTTTCACAGATGGGAAATGCTCAAGCAATTGAAGCTGCCTTCGGGGGAGATTTGCCTCCTGGAATAACTGGAACAAATGAAAGGTGTACCATTCTTGTCACAAATCTCAATCCTGACAGAATTGACGAGGACAAATTGTTCAACTTGTTCTCTATTTATGGGAACATTGTCAGAATCAAACTTCTCCGAAATAAACCAGATCATGCACTTGTCCAGATGGGGGATGGTTTTCAAGCTGAATTGGCAGTTCACTTTCTGAAGGGGGCCATGTTGTTCGGAAAGCATTTGGATGTGAACTTCTCAAAGCATCCAATTATAACCCAAGGTCCTGATACACATGAATACATGAACTCCAATCTCAATCGATTCAACCGAAATGCTGCTAAAAACTACCGGTATTGCTGCTCGCCAACAAGGATTATCCACATGTCCTCCCTCCCACAAGAAATTATTGAAGACGAGATTGCAAGTCTTCTGCAGGAGCATGGAATCATTGTCAACTGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTCGTTCAGTTTGAGACCGAAGAGGAGGCAACTGAAGCCCTTGTTTGCAAGCATGCAAGTTCACTTTCCGGCTTCGTGGTCCGTATCTCCTTTTCGCAGTTGCAAAATATATGA 1332 0.4339 MAEQSKVIHVRNVGHEISENDLLQLFQPFGVVTKLVMLRAKNQALVQMQDVASADSAIQFYINSQPSIRGRNVYVQFSSHRELTTMDQNQGREDEPNRILLVTVHQVLYPMTVDVLQQVFSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTDQKGRPSQAGYGDAGNYGGIQGSGPRQAGFSQMGNAQAIEAAFGGDLPPGITGTNERCTILVTNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKHLDVNFSKHPIITQGPDTHEYMNSNLNRFNRNAAKNYRYCCSPTRIIHMSSLPQEIIEDEIASLLQEHGIIVNCKVFEMNGKKQALVQFETEEEATEALVCKHASSLSGFVVRISFSQLQNI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1015 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Mtr6g1015 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Mtr6g1015 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Mtr6g1015 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Mtr6g1015 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Mtr6g1015 443 Gene3D - 98 201 IPR012677 -
Mtr6g1015 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Mtr6g1015 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 432 IPR000504 GO:0003723
Mtr6g1015 443 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Mtr6g1015 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 5 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Mtr6g1015 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Mtr6g1015 443 SUPERFAMILY RNA-binding domain, RBD 255 439 IPR035979 GO:0003676
Mtr6g1015 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 335 - -
Mtr6g1015 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Mtr6g1015 443 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Mtr6g1015 443 Gene3D - 354 443 IPR012677 -
Mtr6g1015 443 MobiDBLite consensus disorder prediction 185 227 - -
Mtr6g1015 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Mtr6g1015 443 Gene3D - 250 348 IPR012677 -
Mtr6g1015 443 MobiDBLite consensus disorder prediction 185 202 - -
Mtr6g1015 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Mtr6g1015 443 Gene3D - 1 97 IPR012677 -
Mtr6g1015 443 Pfam RRM-like domain 97 174 IPR021790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1015 Mtr-Chr6 13736213 13746077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1015 257 430 Eukaryotic Initiation Factors Gene Family AT3G16380 24.309 7.76e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1015 K14948 - gmx:100819672 766.918