Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0996 ATGTGGTTTTGTCCAAACAAAATTAGGGCAGTGGCTGCAATAGGAAAGCAAACTGATCATCTGGCATTGCTCAAATTCAAAGAATCAATAACTAGTGACCCATACAATACTCTTGAATCTTGGAATTCTTCCATCCACTTCTGCAAGTGGCATGGAATCACATGTAGCCCCATGCATGAACGAGTTACAGAGTTGAGCCTAAAAAGATATCAGTTACATGGATCTTTATCTCCCCATGTTTGCAATCTCACTTTTCTGGAAACTCTTGACATTGGAGACAACAACTTCTTTGGAGAAATTCCACAGGAGTTGGGTCAGTTGCTACATTTGCAACATCTTATTCTCACCAATAATTCTTTTGTAGGTGAGATTCCTACAAACCTGACATATTGCTCCAATCTCAAATTATTGTATTTGAATGGGAACCATCTCAATGGTAAAATACCAATTGAAATTGGCTCTTTGAAAAAGCTTCAAGCAATATCTGTTGGGAATAACCATTTAACCGAAGGAATCCCTTCATTTATAGGAAATCTTTCATGCTTAACACGTCTAAATTTGGGTGAGAACAATTTCTCCGGTAAGATTCCACAAGAAATATGTTTCCTCAAACACTTGACAATTTTAGGTGTGAGTGAGAACAATTTGTCCGGTAAGATTCCTTCTTGTCTTTATAATATCTCATCACTTATTTCCCTTACGGTAACACAGAATCACCTTCATGGCTCTTTTCCACCCAACATGTTCCACACCCTCCCCAATATTCAAATATTCGCTTTTGCAGCAAATCAATTCTCAGGTCCAATCCCTACTTCGATTGCAAATGCTTCTGCCCTACAAATATTAGACTTAGGAAACAACATGAATTTGGTTGGACAAGTTCCAAGTCTTAGGAATTTACAAGATCTTTCCTTCCTAAGTTTGGAAGTTAACAATTTAGGTAACAATTCAACTATGGATTTAGAGTTTTTAAAATATTTGACAAATTGCAGTAAACTATACGTGCTTTCGATATCTTATAATAATTTTGGAGGTCATTTGCCAAATTCCATAGGCAATTTATCGACTGAACTTCCAGAACTATATATGGGGGGTAATATGATATCAGGAAAAATTCCTGCAGAATTAGGACGTCTAGTTGGCTTAATTCTCTTGACCATGGAGTCTAACTGCTTTGAAGGAATTATTCCAACAAATTTTGGGAAGTTCCAAAAGATGCAGGTATTATCTTTGAGGGAAAACAAGTTGTCAGGAGGTATTCCACCCTTCATAGGCAATCTCAGTCAATTGTATTATTTAGAATTAAATCATAATATGTTTCAAGGAAGTATTCCTCCAAGCATAGGAAACTGTCAAAATTTACAATCTCTTGATCTTTCTCATAATAAGCTTAGAGGAACCATACCTGTAGAGGTTTTAAATCTTTTTTCTTTATCAATCTTATTGAACTTGTCACATAACTCTTTAAGTGGTAGCTTACCAAGAGAAGTGGGTATGTTAAAAAATATTGAAGCATTAGATGTCTCTGAGAATCATCTATCTGGTGATATTCCTAGAGAAATTGGTGAATGTACAAGCTTAGAATATATTCATTTGCAAAGGAACTCCTTCAACGGAACAATACCGTCCTCTTTGACTTTTCTCAAAGGTCTTCGATATTTAGACCTTTCAAGAAATCAATTGTCTGGATCAATTCCTGATGGTATGCAAAATATCTCTGTTTTAGAATATTTGAATGTTTCTTTTAACATGTTGGAAGGAGAGGTACCGACAAATGGTGTATTTGGAAATGCAACCCAAATAGACTTGATTGGAAACAAAAAGCTTTGTGGAGGTATTTCCCACCTGCATCTACCACCATGCCCTATCAAGGGTAGGAAACATGCAAAACAACACAAGTTCAGGTTGATAGCAGTGCTAGTTAGTGTGGTTTCTTTTATTCTCATACTTTCATTTATCATAACTATCTACATGATGAGGAAAAGAAATCAGAAGAGATCTTTTGATTCACCAACAATTGATCAACTAGCTAAGGTTTCATACCAAGAATTACATGTTGGAACCGATGGATTCTCAAATAGAAACATGATCGGATCAGGAAGTTTTGGTTCCGTTTACAAAGGAAATATAGTGTCAGAAGATAATGTTGTTGCAGTAAAGGTCTTGAATCTGCAAAAAAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAACGCACTCAAAAATATTAGACACCGAAATTTGGTTAAGGTTTTAACATGTTGTTCTAGCACAAATTACAAAGGTCAAGAATTTAAAGCACTAGTTTTTGAATACATGAAAAATGGAAGCTTAGAACAGTGGTTACATCCTGAGACTTTGAATGCAAATCCTCCAACAACATTGAACCTTGGTCATAGATTAAACATCATCATCGATGTTGCTTCTGCATTGCATTACCTTCATCGAGAATGTGAGCAGTTAATCCTTCATTGTGATCTAAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTTCCGGTACCTCTAATAAGAATACTAGCACAATCGGAGTAAAAGGAACAGTTGGTTATGCTCCACCGGAGTATGGGATGGGTTCAGAAGTTTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTATGCTGGAAATGCTTACTGGTAGAAGACCCACCGATGAACTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTACAATTTCATTTCCTGATAATCTTATAAAGATTTTGGATCCACATCTTTTACCAAGAGCTGAAGAAGGAGCAATAGAAGATGGAAATCATGAGATTCATATTCCAACTATAGAAGATTGCTTTGTTTCACTTCTTAGGATTGCACTTTTATGTTCTTTGGAATCACCAAAAGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTACCACAATCCAGAAGGTCTTTTTAGCTGGTGAGATGAACTGA 3012 0.3616 MWFCPNKIRAVAAIGKQTDHLALLKFKESITSDPYNTLESWNSSIHFCKWHGITCSPMHERVTELSLKRYQLHGSLSPHVCNLTFLETLDIGDNNFFGEIPQELGQLLHLQHLILTNNSFVGEIPTNLTYCSNLKLLYLNGNHLNGKIPIEIGSLKKLQAISVGNNHLTEGIPSFIGNLSCLTRLNLGENNFSGKIPQEICFLKHLTILGVSENNLSGKIPSCLYNISSLISLTVTQNHLHGSFPPNMFHTLPNIQIFAFAANQFSGPIPTSIANASALQILDLGNNMNLVGQVPSLRNLQDLSFLSLEVNNLGNNSTMDLEFLKYLTNCSKLYVLSISYNNFGGHLPNSIGNLSTELPELYMGGNMISGKIPAELGRLVGLILLTMESNCFEGIIPTNFGKFQKMQVLSLRENKLSGGIPPFIGNLSQLYYLELNHNMFQGSIPPSIGNCQNLQSLDLSHNKLRGTIPVEVLNLFSLSILLNLSHNSLSGSLPREVGMLKNIEALDVSENHLSGDIPREIGECTSLEYIHLQRNSFNGTIPSSLTFLKGLRYLDLSRNQLSGSIPDGMQNISVLEYLNVSFNMLEGEVPTNGVFGNATQIDLIGNKKLCGGISHLHLPPCPIKGRKHAKQHKFRLIAVLVSVVSFILILSFIITIYMMRKRNQKRSFDSPTIDQLAKVSYQELHVGTDGFSNRNMIGSGSFGSVYKGNIVSEDNVVAVKVLNLQKKGAHKSFIVECNALKNIRHRNLVKVLTCCSSTNYKGQEFKALVFEYMKNGSLEQWLHPETLNANPPTTLNLGHRLNIIIDVASALHYLHRECEQLILHCDLKPSNVLLDDDMVAHVSDFGIARLVSTISGTSNKNTSTIGVKGTVGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTGRRPTDELFEDGQNLHNFVTISFPDNLIKILDPHLLPRAEEGAIEDGNHEIHIPTIEDCFVSLLRIALLCSLESPKERMNIVDVTRELTTIQKVFLAGEMN* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0996 1003 Pfam Leucine rich repeat N-terminal domain 18 56 IPR013210 -
Mtr6g0996 1003 PANTHER LRR RECEPTOR-LIKE KINASE 10 998 - -
Mtr6g0996 1003 Pfam Protein kinase domain 693 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0996 1003 ProSiteProfiles Leucine-rich repeat profile. 453 474 IPR001611 GO:0005515
Mtr6g0996 1003 Gene3D Phosphorylase Kinase; domain 1 672 772 - -
Mtr6g0996 1003 SMART serkin_6 691 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g0996 1003 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Mtr6g0996 1003 PRINTS Leucine-rich repeat signature 454 467 - -
Mtr6g0996 1003 PRINTS Leucine-rich repeat signature 548 561 - -
Mtr6g0996 1003 Gene3D Ribonuclease Inhibitor 318 622 IPR032675 -
Mtr6g0996 1003 PANTHER OS04G0122200 PROTEIN 10 998 - -
Mtr6g0996 1003 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Mtr6g0996 1003 SMART LRR_typ_2 427 451 IPR003591 -
Mtr6g0996 1003 SMART LRR_typ_2 179 203 IPR003591 -
Mtr6g0996 1003 SMART LRR_typ_2 83 107 IPR003591 -
Mtr6g0996 1003 SMART LRR_typ_2 500 524 IPR003591 -
Mtr6g0996 1003 SMART LRR_typ_2 452 475 IPR003591 -
Mtr6g0996 1003 SMART LRR_typ_2 548 571 IPR003591 -
Mtr6g0996 1003 SUPERFAMILY L domain-like 358 611 - -
Mtr6g0996 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Mtr6g0996 1003 Gene3D Transferase(Phosphotransferase) domain 1 773 998 - -
Mtr6g0996 1003 SUPERFAMILY Protein kinase-like (PK-like) 666 990 IPR011009 -
Mtr6g0996 1003 Gene3D Ribonuclease Inhibitor 76 317 IPR032675 -
Mtr6g0996 1003 Gene3D Ribonuclease Inhibitor 12 75 IPR032675 -
Mtr6g0996 1003 SUPERFAMILY L domain-like 18 313 - -
Mtr6g0996 1003 ProSiteProfiles Protein kinase domain profile. 691 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0996 Mtr-Chr6 13376255 13379384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0996 17 998 Receptor kinase-like Gene Family AT3G47570 45.217 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr6g0996 Pkinase 3.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0996 - - mtr:MTR_6g036870 1570.06