Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0954 ATGGCAGATCTTGTTAACTTAGGGAATGCTGCTGATCGTAACATTGAGCAAGCACTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAGGGAAAGCCAAAATTTTGTCCATTTAGACTCTCTCCTGATGGATCATCTTTAATCTGGATTTCAAGTGGCGGTGAAAAAAAACTGAAGTTATCTTCTGTCTCAAGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCTGAAAAGGATTATGTGTCTTTTTCACTTATTTATAATAACGGAAAGCGGTCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGATGTGTGGATTTCTGGTCTCAAAAAACTGATATCCTCAGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGTGGCCTCAATCTTGATGATAGCAAAGATTTAACATCCAATAGTCCAAGTGGAAGTTCAGCTAGTGCGTCACTAGACATCAGTTCTCCTGACATTTCTGTGAGTCTTCCAAGCACATCACCGAACTCCTATCGGCCTGACAATACCTTGAATTCCGAAAGATCACATGCACGATCAGAGTCAACAAATATGCAAATAAAAGGATCTGGTACTGATACTGTTCGTGTTAGTGTTTCAAGTGCTACATCTAGTCATGGATCAGCACCAGATGACTACGACGCTCTTGCGGATGTGTATATATGGGGGGAAATTATCTGCGAAAACATCAAAGTTGGTGCAGATAAAAGTGTCCATTTCTGCCCAAGGGCAGATGTTCTTCTCCCGAGACCACTGGAATCAAATGTAGTTTTAGACGTACAACATATAGCATGTGGTGTTAGACATGCTTCGTTAGTCACTAGGCAAGGTGAAGTTTTTACGTGGGGCGAGGAATCAGGAGGACGTCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCGCGTCTAGTTGAAGCGTTGACTTCTACAACTGTTGACTTTGTTGCATGTGGGGAGTTTCATTCCTGTGCTGTTACGATGACCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGTTGCTTGGTCATGGCTCTAATGCTAGTCATTGGATACCGAAGAGAATTGGAGGTCCGTTAGATGGGCTTCAAGTTTCCTTTGTTGCTTGCGGTCCATGGCACACAGCCTTGATTACTTCAACTGGGAAGCTGTTTACATTCGGCGATGGAACTTTCGGTGTCTTGGGACACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGACTCATTATTAGGGTTGAGAACAATAGCCGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTATTGCTAGTTTATCATCAGGTAAATTGTTTACTTGGGGAGACGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGAGTCACGGCTTAATCCAACTTGCGTGCCTGCAATTATTGATTACGATTTTAAAAAAATTGCTTGTGGACACAGTTTGACAGTAGGACTGACAACAACCGGTCGTGTTTTTACCATGGGAAGTACTGTTTACGGTCAGCTCGGGAATCCTCAGTCCGATGGAAAGCTTCCGTGCTTGGTTGGTGATAAGATTGCGTTGGAATCCGTTGAAGAAATTTCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGTAAAGGTTCAAATGGGAGATTAGGTCATGGAGATCTTGAAGATAGAAAAACGCCAACTTTGGTTGAAGCGTTGAAGGATCGACATGTGAAATATATTGCATGTGCTTCAAATTACTCTGCCGCCATTTGCCTTCATAAGTGGGTCTCTGGTGCTGAGCAGTCTCAGTGTTCTACTTGTAGGCAAGCATTCGGTTTCACTCGAAAGCGGCACAATTGTTATAATTGTGGGCTTGTGCACTGCCATTCATGCAGTTCAAAGAAAGCATTAAGAGCAGCACTTGCTCCCAATCCTGACAAGCACTACCGTGTGTGTGATTCTTGTTACGCCAAATTGAGCAAGGTTGCAGAAGCTAACAATAGTAATCGGAGGAATGCTTTGCCGCGTCTTTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGAGTGTCCAAGGCTCTTATTCCTTCAAACATGGATTTGATAAAGCAGCTAGATAATAAGGCAGCAAAACAAGGAAAGAAATCCGATACATTCTCGCTTGCTCGCAACTCACAGACACCTTTGCTACAGCTGAAAGATGTTGTCTTCGCCACTGCTGCTGATCTGAGACGAACAACTCCAAGACCGGTGATTGCACCGTCGGGAGTAAGTACTAGATCCGCATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCTGGTCTTTCGTTTTCCAAAAATATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATAAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAAAAACAAATGTGAACGGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATAGCACTAGCTACCGAGGAGTCTACTAAATGCAAAGCTGCAAAACAAGTTATAAAGTCACTTACAGCTCAGCTCAAAGATCTAGCTGAGAAGCTTCCACCTGAAGCTTATGATGCTGAGAACATTAGACCAGCTTACCTACCAAATGGTCTCGAGTCGAACGGCATCCACTATCCGGATACAAATGGGGAGCAGGACTTGAGGGCGGAATCAATCAGTGGCTCAAGTTTGGCCTCCATAGGACTTGAATCCTCTCTGTTCAACAGAACAGCCCGTGATTTGCCTGGAGCCTATGGAACTAATCTCCACCAGCAAATCCGGGGTGTCGTAACCTCTAACGGGACCAGTAATCATCCAGATGTGAAATTGCCGAGTGGGGGCAATGTGATTCAGCCAAGCAGTAGTAGCTTGTCGGATATTGTTGAAGGGAGGGATTCTGGGAATTTCCGTGATGACGAGAGTGGTGTGAAATCGACAAATGCTGCATTGGCTACTAGTAGTAATAATCAAGTTGATGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTGGTGGCCATGCATGATGGAACAAGAGATCTGAAACGAGTGCGATTTAGCCGGAGGAGATTTGGAGAGAACCAAGCCGAGAATTGGTGGTCAGAGAACAAAGACAAGGTATACGAAAAATACAACGTTCGTAGCGTGGACAAGTCTTCTAGCCAAGGAGCGCATAAGGCAGAGGGTGCTGGTTCTCCTGCTTCCCAAACATAG 3357 0.4421 MADLVNLGNAADRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSPDGSSLIWISSGGEKKLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYNNGKRSLDLICKDKVEADVWISGLKKLISSGQGGRSKIDGWSDGGLNLDDSKDLTSNSPSGSSASASLDISSPDISVSLPSTSPNSYRPDNTLNSERSHARSESTNMQIKGSGTDTVRVSVSSATSSHGSAPDDYDALADVYIWGEIICENIKVGADKSVHFCPRADVLLPRPLESNVVLDVQHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNASHWIPKRIGGPLDGLQVSFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVDSLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKESRLNPTCVPAIIDYDFKKIACGHSLTVGLTTTGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIALESVEEISCGAYHVAVLTSKNEVYTWGKGSNGRLGHGDLEDRKTPTLVEALKDRHVKYIACASNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPDKHYRVCDSCYAKLSKVAEANNSNRRNALPRLSGENKDRLDKSELRVSKALIPSNMDLIKQLDNKAAKQGKKSDTFSLARNSQTPLLQLKDVVFATAADLRRTTPRPVIAPSGVSTRSASPFSRRSSPPRSATPIPTMSGLSFSKNIADSLKKTNELLNKEVQKLHAQVESLKNKCERQELEVQRSAKKTQEAIALATEESTKCKAAKQVIKSLTAQLKDLAEKLPPEAYDAENIRPAYLPNGLESNGIHYPDTNGEQDLRAESISGSSLASIGLESSLFNRTARDLPGAYGTNLHQQIRGVVTSNGTSNHPDVKLPSGGNVIQPSSSSLSDIVEGRDSGNFRDDESGVKSTNAALATSSNNQVDAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNVRSVDKSSSQGAHKAEGAGSPASQT* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0954 1118 SUPERFAMILY FYVE/PHD zinc finger 621 696 IPR011011 -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 975 1007 - -
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Mtr6g0954 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1092 IPR013591 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 517 565 IPR000408 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Mtr6g0954 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Mtr6g0954 1118 CDD FYVE_like_SF 630 683 - -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 174 226 - -
Mtr6g0954 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 694 IPR013083 -
Mtr6g0954 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1099 - -
Mtr6g0954 1118 Gene3D - 453 617 IPR009091 -
Mtr6g0954 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1099 - -
Mtr6g0954 1118 Pfam Transcription factor BRX N-terminal domain 871 906 IPR027988 -
Mtr6g0954 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 781 811 - -
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Mtr6g0954 1118 SUPERFAMILY RCC1/BLIP-II 236 622 IPR009091 -
Mtr6g0954 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Mtr6g0954 1118 Coils Coil 820 861 - -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 146 165 - -
Mtr6g0954 1118 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Mtr6g0954 1118 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 1095 1118 - -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 174 228 - -
Mtr6g0954 1118 SUPERFAMILY PH domain-like 15 124 - -
Mtr6g0954 1118 SMART fyve_4 619 688 IPR000306 GO:0046872
Mtr6g0954 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 778 811 - -
Mtr6g0954 1118 Gene3D - 185 452 IPR009091 -
Mtr6g0954 1118 Coils Coil 876 896 - -
Mtr6g0954 1118 MobiDBLite consensus disorder prediction 975 1020 - -
Mtr6g0954 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Mtr6g0954 1118 Pfam Pleckstrin homology domain 16 124 IPR001849 -
Mtr6g0954 1118 CDD PH_PLC_plant-like 13 125 - -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Mtr6g0954 1118 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Mtr6g0954 1118 Gene3D - 14 130 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0954 Mtr-Chr6 12603627 12613219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0954 1039 1103 Major Intrinsic Protein MIP AT1G31880 49.231 1.14e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0954 - - gmx:100805364 1836.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0954 6 12603627 12613219 Mtr1g3671 1 48411897 48423102 PCT