Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0953 ATGGAAGATTTTTGGAACGTGATTTGTGGCGATGATGATTCAGCTTGTTCTTTACTCGGAGGAAAACCTTTCTGTTTCAATTTGGAGGTTCTGACGAATCCTTCTTCATGCATCAACCATTTGTTGATCATTTTTCTTAATCTGTTGTTGCTAATAATGTTGACATTTGTTACGATCCAAAAGTCTTTGGTGAAGTCAATTCAAGGTCAGAATAGAGTGGAAAGTTATTCAAAGTTGCAGCTAGTTTCTGCAATAACCAATGGCTCTCTTGGTTTGTTGCATTTGTTCTTAGGCATTTGGATTTTAGAGGAGAAGTTAAGGAAAAACCTCACTGTTTTTCCTCTTACTTGGTGGCCGCTAGAGTTTTTTCACGGATTCACATGGATCTTAGTTGGTTTAACTATAAATCTTGTGCCGAAACAACTTCCAAGAACATGGTGGCGAATGTTTTCTATTCTTATATTCTTTGTTTCTGGTATTTTCTGTGCATTGTCATTATCTTATGCATTTAGTAGCAAAGAAATGTCCCTTAAGGTAGCTTTAGATGTTCTATCTTTTTTGGGAGTAATTTTGCTGCTCTTTTGCACATACAAAGTATGTAAAGATGAAGATGTCGACAAGGAAATAAATGGAAGTCTATATGCTTCTTTAAATAGCCAGATCCATGATGTTGATCCTCTTGGCCGTATAAGTGTAACCCCATTTTCCAAAGCCGGACTCCTTAGTCGGATGTCATTTTGGTGGTTGAATCCACTAATGAAAAAGGGTCAAAATAAAACACTTGAGGACGAGGACATCCCAAAGTTGCAAGAGCCGGATAGAGCAGAAGTATGTTATTCGTTATTTATAGAACAATCGAATAGAAAAAAGCAGAAGGATCCATCATCTCGATCATCGGTGTTATGGACAATCGTTTTGTGCCACCGGAGAGAGATTTTGATATCTGGATTTTTTGCATTTCTCAAGGTACTCACTCTTTCTTCTTGTCCTATAATTTTGAATGCCTTTATACTGGTGGCTGAGGGTAATCAAAGTTTCAAATTTGAAGGTTATTTTTTGGCCATCTCACTTTTGTTTATCAAGATTTTAGAGTCCCTATCTCAAAGGCAATGGTATTTTCGCTCAAGGGTTATTGGTATGAAAGTTAGATCGTTACTTACTGCATCTATTTATAGGAAACAACTGAAATTATCCAATGCTGCTAGATTGATTCACTCTAGCGGTGAGATAATGAACTATGTGAATGTGGATGCGTATAGAATCGGAGAATTTCCGTTCTGGTTTCACCAGACATGGACAACAGTCCTCCAACTATCAATTGCATTAGTAATTCTTTTTCGTGCTATTGGATTGGCAACAATTGCGTCATTGGTGGTGATAGTTTTGACCGTGTTTTTGAATGCTCCACTAGCAAAGTTACAACATAAGTATCTTAGTAAACTTCTGGTGGCCCAAGATGAAAGGTTGAAGGCTAGTTCTGAGGCTCTGGTGAATATGAAAGTGCTAAAGTTATATGCATGGGAAATGCATTTTAAAAATTCCATTGAAATCCTAAGAATTGTTGAACAAAAATTGTTATCTTCAGTGTTATTACAAAAGGCATACAGCCTTATTCTCTTTTGGTTTTCACCTACTTTGGTCTCTGCTGCTACCTTTTTGGCTTGTTACCTCTTGAAAGTTCCTCTCCATGCAAATAATGTTTTCACATTTATCACAACCGTGCGCCTTGTGCAAGATCCTATTTCAACCATCGGAGATGTTATTGGAGTGATCATTCAAGCAAAGGTTGCTTTTTCTCGGGTTGTGAAATTTCTCGAGGCACCTGAGCTTCAAACTACTAGTGTCAGAAAGAGCTGCTACGATGAGAAGTTAAAGGGCTCAATAAAAATCAAGTCTGCAGATTTTTCATGGGAATATAATATATTGAAGCCAACAATACGAAATATTAATTTAACGATTAGAGCAGGGCAAAAGATAGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTTTATTAGCAGCAATTCTCGGAGAAGTACCGAATACTAAGGGAAAAATTGAAGTTTATGGAAAGTTTGCTTATGTTTCTCAAACAGCTTGGATTCAAACTGGAACAATACAGGAAAATGTTCTGTTTGGATCACCTTTGGATACTCAAAGGTATGAAGAATCACTTCATAGGTCTTCACTGATGAAGGACCTTGAGTTGTTTCCGTATGGTGATCTAACCGAGATAGGAGAGAGAGGTGTTAATCTAAGTGGGGGTCAAAAGCAGCGAATTCAACTTGCTCGAGCTCTTTATCAGAATTCTGATGTATATCTCTTGGATGATCCTTTCAGTGCTGTTGATGCGCACACTGCAAAAAAATTGTTTAATGAATACATATTGGAAGGACTCGCCGGAAAGACAGTCCTTTTTGTTACTCATCAAGTTGACTTTCTCCCATCATTTGATTCCATTTTGTTGATGTCAGATGGGAAAATCCAACAAGCTTCTACGTATCATGATCTACTAACCTTTAGCCAAGAATTTAAGGATCTTGTTAATGCACACAAAAAGATTGGCAACCCTAATCATCTTTTAGATCTTACTTCAACACCAATACATTCAAAGTCTAGTCGAGAGATGAAACAATATTCCATAGAGAACTCGTCTAATGCTAAAAATGGTGATCAATTAATTGAGCAAGAAGAGAGAGAAAAAGGAGACACAGGATTGAAGCCTTACTTACAGTATCTGAATCAGAAAAGCGGATACATATACTACTTTGTCGGTTCTCTTTCTTATGTGATATTTGTGATCTGCCAGATATCGCAAAACTCATGGATGGCCGCTAATGTTGACAATCCTCAAGTCAGCACATTGCAATTGATTACAGTTTACTTGTTGATTGGAGTTAGTTCTATGGTTTTCATTATAATCAGAGCTCTACTTGCAGCTGCTTTGGGAATTCAATCATCGAAGGTTTTATTTGGACAATTAATAAATTCTCTTTTTCATGCACCAATGTCTTTCTATGACACCACACCATTGGGAAGGATACTTAGTAGGGTATCATTAGATCTGAGCATTGTGGATCTTGATATCTCTTTTAACCTCACATATTGTATATCATCCAATATAACTTACTATTCAGGTCTAATAGTTTTAACATCGGTCGCTTGGCAAGTCTTGTTTGTGTGTATACCAATGGCTTATGTTATTATTCGTTTACAGAAACACTACTATGCATGTGCAAAAGAACTTATGCGGATGAATGGCACAACAAAATCGTCCGTTGCTAATCATGTAGCTGAAACTGTTGCTGGAGCTATGACAATAAGAGCTTTTGAGGAAGAAGATCGGTTTTTCAACAAGAATCTTGATTTAATTGATGTCAATGCTACTGCTTTCTTCCATAGTTTTGCCTCAAATGAATGGCTGATCCAACGGGTAGAAACAGCGTACGCCGTTGTTCTTGCCTCTGCAGCACTATCCATCGCTATGCTTCCATTAGGGACTTTATCATCTGGTTTTATTGGTATGGCCCTTTCTTATGGCCTTGCATTAAACAGTGCCTTAGTATATAGCACTCAATACCGATGCATTCTAGAAAATTATATAGTATCAGTAGAAAGGATAAATCAATACTCTCATATACCAAGTGAGGCCCAAGAAGTGAGTGAAGGAAATCATCCTCCAATCAATTGGCCAGATGTCGGAAAAGTTGAAATAAAAGACTTGAAGATACAATACAGGCCTAATGCACCACTTGTACTACATGGTATCAATTGCACCTTTGAAGGAGGGCACAAGATTGGTATTGTCGGTAGAACTGGCAGCGGAAAATCAACTCTGATTGGTGCTTTGTTTCGTCTTGTGGAGCCGACGGGAGGCAAAATTATAGTCGATGGAATAGACATATCATCTATTGGCCTTCATGACTTGAGGTCAAGTTTTGGTATTATACCTCAGGATCCTACCCTTTTCATCGGGACAGTTAGATATAACTTGGATCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCGAAAGTGTCAGTTACGAGAGTCTGTCAAAGATAAAGGTGGATTAGATTCCTCAGTCGTCGAAGATGGATCGAACTGGAGCATTGGACAAAGGCAACTATTCTGTTTAGGGCGCGCTCTTTTGAGGAGAAGTAGGATATTGGTGCTAGATGAAGCAACTGCATCAATTGATAATGCGACCGATTTAATTCTTCAAAATACCATTAGAAAAGAGTTTGCAGATTGTACAGTGATAACAGTAGCGCACAGGATACCAACTGTGATGGATTGCAATATGGTTCTTTCCATAAGTGATGGAAAGTTGGCTGAGTATGATGAACCAATGAAGTTAATGAAGAAGGAAACATCGTTGTTTGGACAACTTGTAAAGGAATATTGGTCTCATTTTCAGTAG 4434 0.3787 MEDFWNVICGDDDSACSLLGGKPFCFNLEVLTNPSSCINHLLIIFLNLLLLIMLTFVTIQKSLVKSIQGQNRVESYSKLQLVSAITNGSLGLLHLFLGIWILEEKLRKNLTVFPLTWWPLEFFHGFTWILVGLTINLVPKQLPRTWWRMFSILIFFVSGIFCALSLSYAFSSKEMSLKVALDVLSFLGVILLLFCTYKVCKDEDVDKEINGSLYASLNSQIHDVDPLGRISVTPFSKAGLLSRMSFWWLNPLMKKGQNKTLEDEDIPKLQEPDRAEVCYSLFIEQSNRKKQKDPSSRSSVLWTIVLCHRREILISGFFAFLKVLTLSSCPIILNAFILVAEGNQSFKFEGYFLAISLLFIKILESLSQRQWYFRSRVIGMKVRSLLTASIYRKQLKLSNAARLIHSSGEIMNYVNVDAYRIGEFPFWFHQTWTTVLQLSIALVILFRAIGLATIASLVVIVLTVFLNAPLAKLQHKYLSKLLVAQDERLKASSEALVNMKVLKLYAWEMHFKNSIEILRIVEQKLLSSVLLQKAYSLILFWFSPTLVSAATFLACYLLKVPLHANNVFTFITTVRLVQDPISTIGDVIGVIIQAKVAFSRVVKFLEAPELQTTSVRKSCYDEKLKGSIKIKSADFSWEYNILKPTIRNINLTIRAGQKIAICGEVGSGKSTLLAAILGEVPNTKGKIEVYGKFAYVSQTAWIQTGTIQENVLFGSPLDTQRYEESLHRSSLMKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNSDVYLLDDPFSAVDAHTAKKLFNEYILEGLAGKTVLFVTHQVDFLPSFDSILLMSDGKIQQASTYHDLLTFSQEFKDLVNAHKKIGNPNHLLDLTSTPIHSKSSREMKQYSIENSSNAKNGDQLIEQEEREKGDTGLKPYLQYLNQKSGYIYYFVGSLSYVIFVICQISQNSWMAANVDNPQVSTLQLITVYLLIGVSSMVFIIIRALLAAALGIQSSKVLFGQLINSLFHAPMSFYDTTPLGRILSRVSLDLSIVDLDISFNLTYCISSNITYYSGLIVLTSVAWQVLFVCIPMAYVIIRLQKHYYACAKELMRMNGTTKSSVANHVAETVAGAMTIRAFEEEDRFFNKNLDLIDVNATAFFHSFASNEWLIQRVETAYAVVLASAALSIAMLPLGTLSSGFIGMALSYGLALNSALVYSTQYRCILENYIVSVERINQYSHIPSEAQEVSEGNHPPINWPDVGKVEIKDLKIQYRPNAPLVLHGINCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPTGGKIIVDGIDISSIGLHDLRSSFGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLRKCQLRESVKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQNTIRKEFADCTVITVAHRIPTVMDCNMVLSISDGKLAEYDEPMKLMKKETSLFGQLVKEYWSHFQ* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0953 1477 Pfam ABC transporter 1254 1401 IPR003439 GO:0005524
Mtr6g0953 1477 Pfam ABC transporter 647 780 IPR003439 GO:0005524
Mtr6g0953 1477 CDD ABCC_MRP_domain2 1235 1454 - -
Mtr6g0953 1477 CDD ABC_6TM_ABCC_D2 928 1212 IPR044726 GO:0140359
Mtr6g0953 1477 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 72 1477 - -
Mtr6g0953 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0953 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 851 IPR003439 GO:0005524
Mtr6g0953 1477 SUPERFAMILY ABC transporter transmembrane region 911 1217 IPR036640 GO:0005524|GO:0016021
Mtr6g0953 1477 SMART AAA_5 1263 1454 IPR003593 -
Mtr6g0953 1477 SMART AAA_5 655 828 IPR003593 -
Mtr6g0953 1477 CDD ABCC_MRP_domain1 628 828 - -
Mtr6g0953 1477 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524
Mtr6g0953 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1470 IPR003439 GO:0005524
Mtr6g0953 1477 SUPERFAMILY ABC transporter transmembrane region 301 606 IPR036640 GO:0005524|GO:0016021
Mtr6g0953 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 851 IPR027417 -
Mtr6g0953 1477 Pfam ABC transporter transmembrane region 943 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0953 1477 Pfam ABC transporter transmembrane region 312 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0953 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1462 IPR027417 -
Mtr6g0953 1477 Gene3D - 1220 1471 IPR027417 -
Mtr6g0953 1477 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
Mtr6g0953 1477 Gene3D ABC transporter type 1, transmembrane domain 885 1219 IPR036640 GO:0005524|GO:0016021
Mtr6g0953 1477 Gene3D ABC transporter type 1, transmembrane domain 283 610 IPR036640 GO:0005524|GO:0016021
Mtr6g0953 1477 Gene3D - 623 857 IPR027417 -
Mtr6g0953 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1188 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0953 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 72 1477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0953 Mtr-Chr6 12582876 12590159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0953 622 1477 Calmodulin-binding Proteins AT2G36910 23.992 2.20e-55 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0953 K05666 - gmx:100811468 2078.14