Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0942 ATGGAGGACTTTTGGAGCATGATTTGTGTGGATTCTTCTTGTTCAGAGACTGAAGGAAGGTCTTCATGTTTTGACATCAAGTTTCTAAAGGATCCTTCCTCATGCACCAACCATTTGTTCATCATTTGCTTTGAGCTGTTGTTGTTGATCATGTTGTCTGCTGTTATGATCCAAAACAAGTCTTTGATTCGGAGTCCGATCAGAATGGAAGGACATTCAAAGTTGCAATTGGTTTCTTCCATAACCAATGGTTGCATTGGTTTGTTGCATTTGTGCCTAGGAATTTGGATTTTAGAGGAGAACCTAAAGAAAAGTTTCTCTATTTTTCCTCTTAGTTGGTGGCTGCTAGAACTTCTTCAAGGAATCTCATGGATGTTAATTGGTTTAACTACAAGTTTTCTGCTGAAAAAACTTCCAAGAACATGGTTGAGACTATTTTCTTTTCTTATATTTTTTGTTTCTAGTATTTTTTGTGCTTTTTCCTTATCTTATGCATTTCACAGTGGCGAATTGTCCCTTAGGTTAGTTTTAGATGTTTTATCATTTTTGGGAGCATTTTTGCTACTCTTTTGCACATACAAAGTGTGTACGTATGAAGACACCGACATGGAAATCGACGGAAGTCTACGTACCCCATTAAATAGCGAGTTGAATGAAGTTGATCATGTTAGTCATGTAAGTGTAACTCAGTTTTCCAAAGCAGGATTCTTTAGTTTGATGTCATTTTGGTGGTTGAATCCATTGATTAAAAGGGGACAAGAAAAAATACTTCATGACGAGGACGTTCCAACGTTGCGGGAGTCTGACCGAGCAGAAGCATGTTATTCAATGTTTATAGATCAACTGAACAGACTAAAGCAGAAGGACGAATCATCATCATGGTCGTTGGTTTTACGGACAATAATTTTGTGCCATCGTAGAGAAATTTTGATATCAGGATTCTTTGCATTACTCAAGGTACTCGCACTTTCTTGTTGTCCTATAATTTTGAATGCCTTTATTTTGGCGGCCGAGGATAATGAAAGTTCCAAATATGAAAGTTATGTATTAGCCATCTCACTTTTGTTTACAAAAATTATAGAATCCTTATCCCAAAGGCAGTGGTATTTTCGCGCTAGACTTGTTGGTATGAAAGTTAAGTCATTACTTGTCGCAGCCGTTTATAAGAAACAACTGAGGTTATCCAATGCTGCTAAATTGATTCACTCTGGTGGCGAGATAATGAATTATGTGAATGTGGATGCTTATAGAATTGGAGAATTACCGTTTTGGTTTCACCATTCATGGACAACATTTCTCCAACTATGTATTTCATTGGTCATTATTTTTCGTGCGGTTGGGCTTGCGACAATTGCATCGTTGGTGGTGATAGTTTTGACGGCGCTATTAAATACTCCACTAGCAAAGTTACAACATAAGTATCTAAGCAAACTTCTCGTGGCACAAGATGAAAGGTTAAAGGCTAGTTCCGAGGCTCTAGTGAATGTGAAAGTGTTGAAGTTATATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAGCCTCAGATTTTCCGAACTCAAATTCTTATCTTCAGTGCTACTGCAAAAAGCATACAATGTCATTCTCTTCTGGTTTTCACCGTTTTTGATCTCTGCTGCGACATTTAGTGCATGTTACTTCTTGAATGTTCCTTTACATGCGAATAATATATTCACCTTTGTGGCAACAATACGACTTATGCAAGATCCAATTTCAACCATCCCTGATGTTATTGGAGTGATCATTCAAGCAAATATTGCATTTTCTCGGATTGTGGAATTCCTCGAGGCACCTGAGTTGCAGAGTTCAAATTTCAGAAAGACTTGCTTTGATGAAAAGTTGAATGGCTCAATTTTAATCAAGTCTTCTGACTTTTCATGGGAATATGATATATTGAAACCAACAATAAGAAAGATAAACTTAAAGGTTAGTGTCGGTCAAAAGATAGCCATTTGTGGAGAAGTTGGCTCAGGTAAATCAACTCTCTTAGCAGCGATTCTCGGAGAAGTCCCTCATACTAAAGGAAATATCAATGTTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGAACAATACAAGAAAATATTTTGTTTGGATCAACAATGGATGTTCAAAGGTATCAAGAAGCACTTTGTAAATCTTCGCTGATGAAAGACCTTGAATTGTTTCCACATGGTGATCTCACTGAAATTGGAGAGAGAGGAGTTAACTTGAGTGGGGGTCAAAAGCAACGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGACATATATCTCTTGGATGATCCATTCAGTGCTGTTGACGCGCACACTGCAACTAATTTGTTCAATGAATATATATTGCAAGGACTTGCTGGAAAGACAGTTCTTCTTGTGACGCATCAAGTTGATTTTCTCCCAGCATTTGATTATGTTCTGTTGATGTCAAATGGGAAAATCCTGCAAGCTGCTCCCTATCATGATCTACTGACCTCTAGCCAAGAATTTGTGGACCTTGTCAATGCTCACAAAGAGACTGCTGGTTCTGATCGGCTAGTAAATGTTACTTCAACCACAAGACATTCAAATTCTGATAGAGATATTAAAAAATCTCTTATGGAGGAACCTTTGAAAGATTTAAACAACGATCAATTAATCAAGGAAGAAGAGAGGGAAAGAGGAGACACAGGGTTGCAGCCTTACTTACAATATCTCAATCATAAAAGAGGCATCCTATACTTCTTGATTGGTTCTCTTTGTCACCTAATGTATGTAATTTGCCAAATATTGCAAAACTCATGGATGGCAGTTAATGTCGACAATCCTAAAGTCAGAACATTGCAATTAGTTGCAATTTACTTGTTGATCGGAATTAGTTCTACTGTTTTCATGATAATCAGAAGTCTTCTTGCTGTTCTATTGGGATATCAATCATCAAAATATTTATTTTCACAATTAATGAACTCCCTTTTTCGAGCACCAATGTCGTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTTTCATCTGATATGAGCATTGTGGATCTTGATGTTTCATTTCATCTCGCTTATGCCGTTGGATCAACTATAAATTGCTACATGGATCTTATAATTTTAACATCAGTCAAATGGCAAGTCTTGTTTGTCTCTATACCAATGGCTTATGTTATTATACAATTACAGAGACACTACTATGCGTGTGCAAAAGAACTTATGCGGATGAATGGCACAACAAAATCATCTATAGCTAATCATGTAGCTGAAAGTGTTGCTGGAGCTATTACAATAAGGGCTTTCGAGGAAGAAGATCGTTTTTTCAACAAGAATCTTAATTTAATTGATGTCAATGCGAGTGCTTTCTTCCACAGTTTTGCATCAAATGAGTGGTTGATCCAACGGGTAGAAACAGCGTATGCAGTTGTTCTTGCTTCTGCGGCACTTTGCATTGCTATGCTTCCTTTTGGGACTTTAACATCTGGATTCATCGGTATGGTACTTTCCTATGGCCTTTCACTAAATGGTTCCTTAGTATACTCAATTCAAAGCCAATGCATTGTAGCAAATTATATAGTATCTATTGAGAGGATAAATCAATACACTCATATACCAAGTGAGGCCCAACAAGTGATTGAAGGAAATCGTCCTCCGGTTAATTGGCCAGCTGCAGGCAAAGTAGAAATACACGACTTGCAGATACGATACAGGCCTACTGGACCACTTGTACTTCATGGTATAAATTGCACATTCGAAGGAGGACACAAGATTGGTATTGTTGGAAGAACGGGCAGCGGGAAATCAACTCTGATAGGTGCTTTGTTTCGACTTGTGGAGCCAGAGGGAGGCAGAATTATAATTGATGGAATAAACATATCGTCTATTGGCCTTCATGACTTGAGGTCAAGTTTAAGTATTATACCTCAGGATCCTACCCTTTTTATTGGGACAGTTAGATATAACTTGGATCCTTTATCTCAACATTCCGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCATTTGAGAGAGATTGTCAAAGATAAAGAAGGCTTGGATTCATCGGTTGTTGAAGATGGATCAAATTGGAGCATTGGACAAAAGCAATTATTCTGTTTGGGGCGTGCTATTTTGAGGCGAAGTAGGATATTAGTGTTGGATGAAGCAACTGCATCAATTGATAATTCAACGGATATGATTCTACAAAAAACCATTAGAAAGGAGTTTGCAGATTGTACTGTGATCACGGTAGCACACAGGATACCAACTGTGATGGATTGCAATATGGTTCTTGTCATTAGCGATGGAAAATTGGGTGAGTATGATGAGCCAATGAAGTTGATGAAGAGAGAAAGATCGTTGTTTGGAAACCTTGTAAAAGAATATTGGTCTTATTTTAAGTCTGCAGAATCACATTGA 4440 0.3764 MEDFWSMICVDSSCSETEGRSSCFDIKFLKDPSSCTNHLFIICFELLLLIMLSAVMIQNKSLIRSPIRMEGHSKLQLVSSITNGCIGLLHLCLGIWILEENLKKSFSIFPLSWWLLELLQGISWMLIGLTTSFLLKKLPRTWLRLFSFLIFFVSSIFCAFSLSYAFHSGELSLRLVLDVLSFLGAFLLLFCTYKVCTYEDTDMEIDGSLRTPLNSELNEVDHVSHVSVTQFSKAGFFSLMSFWWLNPLIKRGQEKILHDEDVPTLRESDRAEACYSMFIDQLNRLKQKDESSSWSLVLRTIILCHRREILISGFFALLKVLALSCCPIILNAFILAAEDNESSKYESYVLAISLLFTKIIESLSQRQWYFRARLVGMKVKSLLVAAVYKKQLRLSNAAKLIHSGGEIMNYVNVDAYRIGELPFWFHHSWTTFLQLCISLVIIFRAVGLATIASLVVIVLTALLNTPLAKLQHKYLSKLLVAQDERLKASSEALVNVKVLKLYAWETHFKNAIESLRFSELKFLSSVLLQKAYNVILFWFSPFLISAATFSACYFLNVPLHANNIFTFVATIRLMQDPISTIPDVIGVIIQANIAFSRIVEFLEAPELQSSNFRKTCFDEKLNGSILIKSSDFSWEYDILKPTIRKINLKVSVGQKIAICGEVGSGKSTLLAAILGEVPHTKGNINVYGKFAYVSQTAWIQTGTIQENILFGSTMDVQRYQEALCKSSLMKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYILQGLAGKTVLLVTHQVDFLPAFDYVLLMSNGKILQAAPYHDLLTSSQEFVDLVNAHKETAGSDRLVNVTSTTRHSNSDRDIKKSLMEEPLKDLNNDQLIKEEERERGDTGLQPYLQYLNHKRGILYFLIGSLCHLMYVICQILQNSWMAVNVDNPKVRTLQLVAIYLLIGISSTVFMIIRSLLAVLLGYQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSSDMSIVDLDVSFHLAYAVGSTINCYMDLIILTSVKWQVLFVSIPMAYVIIQLQRHYYACAKELMRMNGTTKSSIANHVAESVAGAITIRAFEEEDRFFNKNLNLIDVNASAFFHSFASNEWLIQRVETAYAVVLASAALCIAMLPFGTLTSGFIGMVLSYGLSLNGSLVYSIQSQCIVANYIVSIERINQYTHIPSEAQQVIEGNRPPVNWPAAGKVEIHDLQIRYRPTGPLVLHGINCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPEGGRIIIDGINISSIGLHDLRSSLSIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLQKCHLREIVKDKEGLDSSVVEDGSNWSIGQKQLFCLGRAILRRSRILVLDEATASIDNSTDMILQKTIRKEFADCTVITVAHRIPTVMDCNMVLVISDGKLGEYDEPMKLMKRERSLFGNLVKEYWSYFKSAESH* 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0942 1479 Gene3D ABC transporter type 1, transmembrane domain 281 602 IPR036640 GO:0005524|GO:0016021
Mtr6g0942 1479 Gene3D ABC transporter type 1, transmembrane domain 882 1216 IPR036640 GO:0005524|GO:0016021
Mtr6g0942 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1462 IPR027417 -
Mtr6g0942 1479 SUPERFAMILY ABC transporter transmembrane region 907 1214 IPR036640 GO:0005524|GO:0016021
Mtr6g0942 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0942 1479 CDD ABCC_MRP_domain2 1232 1451 - -
Mtr6g0942 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 848 IPR003439 GO:0005524
Mtr6g0942 1479 CDD ABC_6TM_ABCC_D2 916 1209 IPR044726 GO:0140359
Mtr6g0942 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1234 1467 IPR003439 GO:0005524
Mtr6g0942 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 68 1479 - -
Mtr6g0942 1479 CDD ABC_6TM_ABCC_D1 311 598 IPR044746 GO:0140359
Mtr6g0942 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0942 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 68 1479 - -
Mtr6g0942 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 848 IPR027417 -
Mtr6g0942 1479 SMART AAA_5 652 825 IPR003593 -
Mtr6g0942 1479 SMART AAA_5 1260 1451 IPR003593 -
Mtr6g0942 1479 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Mtr6g0942 1479 Gene3D - 1217 1467 IPR027417 -
Mtr6g0942 1479 CDD ABCC_MRP_domain1 625 825 - -
Mtr6g0942 1479 Gene3D - 603 870 IPR027417 -
Mtr6g0942 1479 Pfam ABC transporter 1251 1398 IPR003439 GO:0005524
Mtr6g0942 1479 Pfam ABC transporter 644 777 IPR003439 GO:0005524
Mtr6g0942 1479 Pfam ABC transporter transmembrane region 310 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0942 1479 Pfam ABC transporter transmembrane region 917 1182 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g0942 1479 SUPERFAMILY ABC transporter transmembrane region 298 606 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0942 Mtr-Chr6 12285971 12293520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0942 589 836 Calmodulin-binding Proteins AT2G36910 29.278 1.36e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0942 K05666 - gmx:100811468 2140.15