Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0905 ATGACAGTAAAAAGTGAGAAAGTTGCAATAGGAATCGACCTAGGAACAACCTATTCTTGTGTTGCTGTATGGAAGAATGATAAGGTAGAGATAATAGTGAACGACCAAGGGAATAGAACAACACCTTCTTATGTTGCCTTCACTGACTCTCAAAGAATGATTGGTGATGCTGCTTCCAATATGGCTGCATCCAACCCAACCAACACTGTTTTTGATGCAAAGAGGCTAATTGGTAGGAAGTTTTGCGACTCAATCGTACAAAGTGATATGAAGTCGTGGCCCTTCAAAGTAATTGGCAACCTCAATGACAAACCCATGATTGTTGTTAACTATAAAGACGAGGAAAAGCATTTTGCTGCTGAAGAAATCTCATCGATGGTATTGGCAAAAATGGCCGAGATAGCTGAAGTTTACCTTGGATCAACAGTGAAGGATGTTGTTATAACTGTGCCTGCTTACTTTAATGACTCACAACGCCAGTCCACCCAAGATGCGGGTGTTATTGCTGGCCTCAATGTTATGCGAATAATCAATGAGCCTTCTGCAGCTGCAATTGCATATGGTCTTGACATGAAACCTTTTAATCATGGATGTAAACATGTTTTCATTTTTGATTTAGGAGGTGGTACTTTGGACGTGTCCATTCTCACATTTGAGAAAGGTGCTATCAATGTTAAGGCGATTGCAGGAGACACTCACCTTGGGGGACAAGACTTTGATAATACAATGGTGAACCATTTTGTGAATGAGTTCTCGAGGAAGTATAAAATCGACATTAGTGGAGATCCAAGAGCCCTTAGGAGGTTGAAGTCTGCTTGCGAGAAAGCAAAAAGGATACTTTCTTCCAATATTACAACCACCATTCAGATAGAGAGTTTAAATCAAGGTATAGATTTCTACTCATCGATTAGTCGTGCAAAGTTTGAGGAACTCAACAAGAATCACTTCGACAAGTGCATGGAGATTGTGGAAAAGTGTATAATTGATAGTGGGATGGACAAGAGTAGCATTCATGATGTTGTCCTTGTTGGTGGCTCTACCAGGATTGTAAAAGTGCAACAAATGGTGAGTGATTTCTTCGGGGGGAAGCTTTTATGCAAAAGCATCAATGTCGATGAGGCGGTGGCATATGGCGCTGCTGTCCATGCTTCTATATTGAGTGGTGAGTGTAGTGAGAAAGATTTACAATTGTCGGAGGTCATTCCTTTGTCCCTTGGATTGGAGACTCATGGGGGGATTATGAACACAATAATCCCTAGGAATACCAAAATTCCTGCCAAAATGGAACATGTATTCACCACACATTTGCACAACCAAATGAATATTCTAATTCATGTTTATGAAGGTGAGAGGAAAATAACTAGGGAAAACAACTTGCTTGGAAAATTTGTTTTGGAAATTCCTCCGGCTCCGGCAGGTGTTCCTCAGATTAAAATCAGCTTCCAAATCGATGATGATGGCATCTTAGACGTTTGTAGCACGGAAAAGTCCCTTGGAGTTAATAAGAAGGTTAAAATAATAAGTGACAAGGGAAGGTTGTCAAAGGAGGATATTGAGAGGAAGATCAAAGAAGCTGAGAAGTACAAAGATGAAGACAAGAGGTATATGAAGAAGGTAGAAGCGAGAGTTGTACTAGAGACGTATGCATACAACATGAGGAATGCTATAAATGATAAGGATATTAGTTTGATGCTTTCGTCAAAAGAAAAGGAAAAGATCAATAATGCACTTGATTTGGTCTTTACGTGGCTCGATGTTAACGTGATTGCGGAACAAGAACAATTTGAGTATTATACGAGCATTCTTTCAAGTGTATTTGATGCAGTTATAGTGAAGAAGATAAATGATGAGAGGCATGGTGTGCAAGAGGGTATTATGGTTGGGAATGCAGTAAAGAATAAAAAGAATCATTGGAAACAAACTTTACTAAAATATTCTTTCATTATAGTCCATGCAGCTGCAACAACTAACATCACCGGGCTAGCCTCTCAACTCATTGTTGACTTTGTAAAAAAAGATTAA 2022 0.3937 MTVKSEKVAIGIDLGTTYSCVAVWKNDKVEIIVNDQGNRTTPSYVAFTDSQRMIGDAASNMAASNPTNTVFDAKRLIGRKFCDSIVQSDMKSWPFKVIGNLNDKPMIVVNYKDEEKHFAAEEISSMVLAKMAEIAEVYLGSTVKDVVITVPAYFNDSQRQSTQDAGVIAGLNVMRIINEPSAAAIAYGLDMKPFNHGCKHVFIFDLGGGTLDVSILTFEKGAINVKAIAGDTHLGGQDFDNTMVNHFVNEFSRKYKIDISGDPRALRRLKSACEKAKRILSSNITTTIQIESLNQGIDFYSSISRAKFEELNKNHFDKCMEIVEKCIIDSGMDKSSIHDVVLVGGSTRIVKVQQMVSDFFGGKLLCKSINVDEAVAYGAAVHASILSGECSEKDLQLSEVIPLSLGLETHGGIMNTIIPRNTKIPAKMEHVFTTHLHNQMNILIHVYEGERKITRENNLLGKFVLEIPPAPAGVPQIKISFQIDDDGILDVCSTEKSLGVNKKVKIISDKGRLSKEDIERKIKEAEKYKDEDKRYMKKVEARVVLETYAYNMRNAINDKDISLMLSSKEKEKINNALDLVFTWLDVNVIAEQEQFEYYTSILSSVFDAVIVKKINDERHGVQEGIMVGNAVKNKKNHWKQTLLKYSFIIVHAAATTNITGLASQLIVDFVKKD* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0905 673 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Mtr6g0905 673 Gene3D Actin; Chain A, domain 4 235 318 - -
Mtr6g0905 673 Gene3D - 192 366 - -
Mtr6g0905 673 Gene3D - 10 383 - -
Mtr6g0905 673 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 2 619 - -
Mtr6g0905 673 Gene3D - 542 615 IPR029048 -
Mtr6g0905 673 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 546 IPR029047 -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 8 21 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 36 48 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 58 66 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 146 166 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 209 219 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 337 353 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 369 389 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 394 413 - -
Mtr6g0905 673 PRINTS 70kDa heat shock protein signature 474 490 - -
Mtr6g0905 673 Pfam Hsp70 protein 9 604 IPR013126 GO:0005524|GO:0140662
Mtr6g0905 673 Coils Coil 518 538 - -
Mtr6g0905 673 Gene3D - 71 126 - -
Mtr6g0905 673 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Mtr6g0905 673 PANTHER HEAT SHOCK PROTEIN 70KDA 2 619 IPR013126 GO:0005524|GO:0140662
Mtr6g0905 673 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 540 616 IPR029048 -
Mtr6g0905 673 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
Mtr6g0905 673 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 541 IPR029047 -
Mtr6g0905 673 SUPERFAMILY Actin-like ATPase domain 199 388 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0905 Mtr-Chr6 11696919 11701978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0905 1 612 Calmodulin-binding Proteins AT3G12580 65.528 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0905 K03283 - gmx:100798636 863.988