Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0883 ATGGGAAAGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGTTTTTAGTCATGATTCCAGAAAAGACAAGAAAAGCAAGAAATCTAAGAAAAAAAGTACTGAAAAGGACTTAGAAGTGGAAACAGAAGAAGTACAAGTTGCTGTTCCACCAATAGAAGATGTTAAATTGACTGAGGCAGAGAATGAACAAAATAAACAAGCAGTGTCTCTTGCTTATGCCACTGCTGCGGCGGCAGGGGCTGCTGTTGCTGCTGCTCAGGCTGCTTTCGAGGTTGTTCGTCTCACGAGTATGCCTCATTACCCTACAAAGACTAAGGAAGAATTGGCGGCTATCAAGATTCAGACAGCGTTCCGCGGATATTTGGCGAGAAGAGCGTTGCGCGCCTTGAGAGGTTTGGTGAGATTGAAGACAATGGTTCAAGGACAATCTGTAAAACGGCAAGCTGACAGCACCTTAAGATGCATGCAAACTCTAGCAAGATTGCAGTCACAGGTTCGCCAAAGGCGGATTCGAATGTCCGAGGATAATCAGGCTGTTCAACGCCAACTACAACAGAAACACGAAAAAGAACTTGTGAAGCTGCAAGCTGCCGTTGGAGAAGATTGGGATGCTAGCTTGCAGTCGAAGGAACAAATCCAAGCAAAACTATTGCAAAGGCAAGAAGCTGCCTTCAAAAGAGAGAGGGCTTTAGCCTATTCATTCTCACATCAGCAAACATGGAAGAATTCTTCAAAATCTATAAACCAAACATTTATGGATCCAAACAATCCTCACTGGGGATGGAGTTGGTTAGAGAGATGGATGGCGACTCGACCTTGGGAAGCCGAAAACATCATTATGAATCACAATGATCATCCATCTATTAAGAGTTCATCAAAGCCAAATTATATTCTTCCTTATGATAACAAACCTTCCCCAGTTAGCCAAAAATCAAGAAGGCAAACCATTCACAATTCTCCTTCAACTTCCTCAAAGGCAAGACCATCAAACTCAAAGGGTGAAAGTAGTATCGATGACTCGAGAAGCATGTTTAGCGCTCAATCTGAACGGTATCGAAGATATAGTAGCATTGCAGGATCATCGGTAAGAGACGATGCAAGCGTTGAAAGCTCGCCGGTGTTTCCTAGTTACATGGCACTCACTAGTTCAGCAAAGGCAAAGTCTAGAGTAATGCAAAAAACTTCACCATCACCATCTTCAATTTCTGCAAGGAAGAGGCTTTCTTTCCCTGCTTCTCCGGTTGGTTCGAGACGGCACTCTGGTCCACCTAAGGTGGAAATATAA 1284 0.4354 MGKKGSWFSAVKKVFSHDSRKDKKSKKSKKKSTEKDLEVETEEVQVAVPPIEDVKLTEAENEQNKQAVSLAYATAAAAGAAVAAAQAAFEVVRLTSMPHYPTKTKEELAAIKIQTAFRGYLARRALRALRGLVRLKTMVQGQSVKRQADSTLRCMQTLARLQSQVRQRRIRMSEDNQAVQRQLQQKHEKELVKLQAAVGEDWDASLQSKEQIQAKLLQRQEAAFKRERALAYSFSHQQTWKNSSKSINQTFMDPNNPHWGWSWLERWMATRPWEAENIIMNHNDHPSIKSSSKPNYILPYDNKPSPVSQKSRRQTIHNSPSTSSKARPSNSKGESSIDDSRSMFSAQSERYRRYSSIAGSSVRDDASVESSPVFPSYMALTSSAKAKSRVMQKTSPSPSSISARKRLSFPASPVGSRRHSGPPKVEI* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0883 427 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Mtr6g0883 427 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 426 - -
Mtr6g0883 427 MobiDBLite consensus disorder prediction 382 427 - -
Mtr6g0883 427 MobiDBLite consensus disorder prediction 382 406 - -
Mtr6g0883 427 MobiDBLite consensus disorder prediction 284 344 - -
Mtr6g0883 427 Pfam IQ calmodulin-binding motif 109 127 IPR000048 GO:0005515
Mtr6g0883 427 PANTHER IQ-DOMAIN 5-RELATED 1 426 - -
Mtr6g0883 427 Gene3D - 63 133 - -
Mtr6g0883 427 SMART iq_5 105 127 IPR000048 GO:0005515
Mtr6g0883 427 MobiDBLite consensus disorder prediction 16 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0883 Mtr-Chr6 11280733 11284438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0883 1 426 IQD Protein Family AT5G03040 47.425 1.20e-117 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0883 - - lja:Lj0g3v0301539.1 508.834