Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0866 ATGGAGAAACAAGAACCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGTGTAAGGCAAAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGAGTGTGGCTTGGCACCTTTGAAACAGCTGAAGCTGCAGCTACTGCTTATGATGAAGCTGCATTGAGATTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCGACTCATTTCTAATTTGCCTTCGGATCCAAAACCACCGCGTAATAAGAATAATGCTTCATCTTCTTCCTCTTCTTCTTCGCAGCTTGCTCCACCGAAGCCTCTTTTTCCTTCGTCGTTGTCATCAGAAGAGGTGTTCCCAAACCTAATGCAATATGCACAAGTGCTTTGTAGTAAGGATGATGAAGATCTTCGACGTGCCGCTTCAAGTCTTTACAATAATAATAATCATCAACAATATCATCATCAGAATAATATTAATAATACTAATGAGCGATTTTGTTATTATAATTTGCCGTCATTTTTCTCAACACCATCAACAATGTCGCCATCTTCTACTTCTAAGGATGTTGTTGTGCCTAGGGTTGGAGATTGTCATCCTTTTGATAGGAACATGCGAGGGCCATAG 636 0.3978 MEKQEPSQPTNQGNEKKKHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKLNFPRLISNLPSDPKPPRNKNNASSSSSSSSQLAPPKPLFPSSLSSEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNNNHQQYHHQNNINNTNERFCYYNLPSFFSTPSTMSPSSTSKDVVVPRVGDCHPFDRNMRGP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0866 211 MobiDBLite consensus disorder prediction 86 112 - -
Mtr6g0866 211 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Mtr6g0866 211 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 MobiDBLite consensus disorder prediction 77 112 - -
Mtr6g0866 211 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 PANTHER DNA-BINDING DOMAIN 2 190 IPR044808 GO:0003700|GO:0009873
Mtr6g0866 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 2 190 - -
Mtr6g0866 211 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Mtr6g0866 211 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Mtr6g0866 211 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0866 Mtr-Chr6 11060050 11062311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0866 1 148 AP2-EREBP Transcription Factor Family AT5G13330 46.405 1.36e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr6g0866 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0866 - - mtr:MTR_6g033255 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0866 6 11060050 11062311 Mtr6g0866 6 11060050 11062311 ECH