LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g0856	ATGGTTGATGATTCTAACGATGACCCATCAAAGATTCAATCGCTTTCAACCAATTCACCTAATGATGCAGGGAATGATGTCAAGGTGAGTTCTAAGGACCAGAGAGATGCTCTTCCTGGGGAGCCCCAGTGTATTGTATGTGGCCGATACGGTGAATATATATGTGATGAAACTGATGACGATGTTTGTAGTTTGGAATGTAAACAATCGGTACTATCTCGAATTTCCAAATCGTCGTCTAGTGTTGGATGTCTTCCACCACCTAAAAAGCTACCTGCAGCCGATGAGTGCATTTATGTTAGAGATACTGATAACATATCAGGAACGCCGTCTTTAGGAGGTGATCATGTTCAGGCTGAATTGCTTCGGAAGAAACTCGACATTCATGTGAAGGGTGTTGTTTCGGCACCGGTTATGTCATTCGCTTCATGTAACCTCCCTGACAAACTCCTGCAGAACATAGAAGCAGCTGGTTATGAGATGCCTACGCCTGTTCAAATGCAAGCCATCCCTGCTGCTTTGGTCGGGAAGAACATGCTTGTTTTGGCCGATACAGGTTCAGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGTTGTGCTAGTCATCGTTTGATGTATGTTTCGGATAACAAAAAGCCTCTAGCTATGGTGTTAACACCTACTAGAGAGCTCAGTATACAGGTTGAAGAGCACGCGAAATTACTCGGGAAAGGGTTGCCGTTTAAAACCGCACTTGTGGTTGGTGGTGATGCCATGGCTAGACAACTTTACCGCATTCAACAAGGAGTTGAATTGATTGTGGGAACACCAGGACGGCTTGTTGATCTTTTAACGAAAAATGAGATTGATTTAGATGACGTGACGACTTTCGTTGTCGATGAAGTGGACTGCATGCTTCAAAGAGGTTTTCGAGATCAGGTCTTACAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTATTCTGCAACAACGTCCGATTCTTTAGAGAAGATGGCAAACTCTATGGCAAAAGATACAGTGGTTATAACTGTTGGCGAACCTAACAGACCAAACAAGGCGGTGAAGCAGCTAGCAATTTGGGTCGAGTCGAAACAAAAGAAGCAGAAACTGTTTGATATTTTAAAAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATATGTCGGCTCAAGACTCGGGGCAGATCTCTTGGCAAACGCAATTACAGTTTCAACAGGAGTTAAAGCTGTTTCAATACACGGCGAGAAATCTATGACCGAAAGGAGAGAAATAATGCAGTCATTTATGGTTGGCGAGTTCCCGGTGGTTGTGGCTACCGGAGTTCTGGGTAGAGGGGTTGATCTATTAGGCGTAAGACAAGTTATTGTATTCGACATGCCTAATTCAATTAATGAATATGTACATCAAATAGGAAGGGCCTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGATGAGAATAAGAATGTTTTTCCAGAGTTAGTTGATGTATTAAAGTCGGGTGCCGCCGCTATACCTCGGGAGCTTATCAATTCACAGTATACCACAAGGGTTTTCTCTGGAGGAAAGGGTTCAAAGAAAAGAAAACATAGATGA	1617	0.428	MVDDSNDDPSKIQSLSTNSPNDAGNDVKVSSKDQRDALPGEPQCIVCGRYGEYICDETDDDVCSLECKQSVLSRISKSSSSVGCLPPPKKLPAADECIYVRDTDNISGTPSLGGDHVQAELLRKKLDIHVKGVVSAPVMSFASCNLPDKLLQNIEAAGYEMPTPVQMQAIPAALVGKNMLVLADTGSGKSASFLIPIISRCASHRLMYVSDNKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKNEIDLDDVTTFVVDEVDCMLQRGFRDQVLQIFTALSQPQVLMYSATTSDSLEKMANSMAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILKSQKHFKPPVVIYVGSRLGADLLANAITVSTGVKAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSINEYVHQIGRASRMGEEGQAIVFVNDENKNVFPELVDVLKSGAAAIPRELINSQYTTRVFSGGKGSKKRKHR*	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g0856	538	Gene3D	-	23	81	-	-
	Mtr6g0856	538	MobiDBLite	consensus disorder prediction	7	27	-	-
	Mtr6g0856	538	CDD	SF2_C_DEAD	358	490	-	-
	Mtr6g0856	538	Gene3D	-	115	347	IPR027417	-
	Mtr6g0856	538	MobiDBLite	consensus disorder prediction	1	38	-	-
	Mtr6g0856	538	Gene3D	-	348	522	IPR027417	-
	Mtr6g0856	538	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	357	520	IPR001650	-
	Mtr6g0856	538	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	139	167	IPR014014	GO:0003724
	Mtr6g0856	538	Pfam	HIT zinc finger	42	68	IPR007529	-
	Mtr6g0856	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	286	495	IPR027417	-
	Mtr6g0856	538	PANTHER	ATP-DEPENDENT RNA HELICASE DDX59-RELATED	25	529	-	-
	Mtr6g0856	538	Pfam	Helicase conserved C-terminal domain	370	481	IPR001650	-
	Mtr6g0856	538	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	25	529	-	-
	Mtr6g0856	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	349	IPR027417	-
	Mtr6g0856	538	Pfam	DEAD/DEAH box helicase	163	334	IPR011545	GO:0003676\|GO:0005524
	Mtr6g0856	538	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	170	346	IPR014001	-
	Mtr6g0856	538	SMART	ultradead3	158	361	IPR014001	-
	Mtr6g0856	538	SMART	helicmild6	399	481	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g0856	Mtr-Chr6	10876400	10879790	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g0856	140	498	Eukaryotic Initiation Factors Gene Family	AT3G13920	33.149	9.34e-51	177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g0856	K19466		-	gmx:100781473	798.89