Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0843 ATGGTGAGTCCAATGAATGAATATGAAAACAAATGTCCATTTTGTGATACACAATTTGGTGATGCAATGGAAAATCTAAGGGACCATAATAATGATGCTATTGATTTAAGTGGATTTGATTTGTTGTTACAACATTTGGCACAAATTAGTCCTAATGGATATGCAAGTGTAAATCCTCCAACAAAGAAGGAAGCAATTGAAGCAATGGAAAGTGTGATTAATGATGAGAAATTGCAATGTACAATATGTTTGGAGGATGTTGAGATTGGGGATATTGCTAAAGAAATGCCATGTAAGCATAAATTTCATGGTGATTGTATTGTATCATGGCTTAAGCTACATAGTTCTTGTCCAGTTTGTAGGTTTCAAATGCCTTGTGAGGAATCAAATGTTTTGGCAAATTTGGAAAATGGAAATAGAGAAAACCAAAATAATGAGGTTGTGAGGGGTAGAAATGGAAGGAGGAATTGGTTTCCTGTGCTTCAATCTTTTAATAATTTCCTTCCTTTTCCTTGA 516 0.3411 MVSPMNEYENKCPFCDTQFGDAMENLRDHNNDAIDLSGFDLLLQHLAQISPNGYASVNPPTKKEAIEAMESVINDEKLQCTICLEDVEIGDIAKEMPCKHKFHGDCIVSWLKLHSSCPVCRFQMPCEESNVLANLENGNRENQNNEVVRGRNGRRNWFPVLQSFNNFLPFP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0843 171 Pfam Ring finger domain 79 121 IPR001841 -
Mtr6g0843 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 31 170 - -
Mtr6g0843 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 36 - -
Mtr6g0843 171 ProSiteProfiles Zinc finger RING-type profile. 80 121 IPR001841 -
Mtr6g0843 171 SUPERFAMILY RING/U-box 66 126 - -
Mtr6g0843 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 127 IPR013083 -
Mtr6g0843 171 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 31 170 - -
Mtr6g0843 171 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 36 - -
Mtr6g0843 171 SMART ring_2 80 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0843 Mtr-Chr6 10748934 10749881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0843 37 147 C3H Transcription Factor Family AT1G26800 41.071 8.30e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0843 K11982 - cam:101512035 237.654