Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0841 ATGGATATTTGCAACAATGTATCAGTTTCAGAAGAGTTTCAACAAGAGTTTTCTACCATTGATGACCTTTTTCCTGCTCACAACACGGAAGTGGATTTAGGGATGGAGTGGTTGTCAGTGTTTGTTGAAGAATGTTTTTCAAGTAAACCAAGTTGTGTCATAGCACCTTCTTCTAATGTTCAAATTCAAGAAAGTACAAACACAAAACCTTCAAACACAATGCAAAAACCTCAACAACAAAATCAATCTTATTTGCAAAATTTTGTTGTTCCTGGAAAAGCAAGAAGCAAGAGAAAAAGACTTTCAGCTCCTAGTACAAATATTTGGTCACATTCACATCTTATAAGTGATGGTAATTTGATTTCAGATCCTCCTTTGTTGAAACAAGCTTATTGGTTAGCCGATAGCGAACTCATTGCTCCGAAAAACGAGCAAAAAGTCTCTGCAGTTGCGTACGGAGATCAGAAAGAAGCAAAAAGAAGGGTGAAGAAAGAGAGTTATGAGGTTGGAATTATTCAAGTTAAGAATAGTGAGAATGTTAATGATGATGATGAGGAACATATTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAAACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCTCACAAAAAAGTTCTTGAGATGAGAATGCAATCTATTAAGTAG 786 0.3766 MDICNNVSVSEEFQQEFSTIDDLFPAHNTEVDLGMEWLSVFVEECFSSKPSCVIAPSSNVQIQESTNTKPSNTMQKPQQQNQSYLQNFVVPGKARSKRKRLSAPSTNIWSHSHLISDGNLISDPPLLKQAYWLADSELIAPKNEQKVSAVAYGDQKEAKRRVKKESYEVGIIQVKNSENVNDDDEEHIPNARRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0841 261 Pfam GATA zinc finger 194 228 IPR000679 GO:0006355|GO:0043565
Mtr6g0841 261 SMART GATA_3 188 242 IPR000679 GO:0006355|GO:0043565
Mtr6g0841 261 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355|GO:0043565
Mtr6g0841 261 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355|GO:0043565
Mtr6g0841 261 Gene3D - 185 261 IPR013088 GO:0006355|GO:0008270
Mtr6g0841 261 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 259 - -
Mtr6g0841 261 CDD ZnF_GATA 193 240 IPR000679 GO:0006355|GO:0043565
Mtr6g0841 261 PANTHER GATA TRANSCRIPTION FACTOR 1 259 - -
Mtr6g0841 261 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0841 Mtr-Chr6 10725589 10727417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0841 35 258 C2C2-Gata Transcription Factor Family AT4G32890 41.228 2.21e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr6g0841 GATA 1.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0841 - - ccaj:109793203 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2337 7 39838721 39839968 Mtr6g0841 6 10725589 10727417 PCT