Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0823 ATGGAAATTCAATTTGATGAACCAAAGAAGAGTTTGAGACCAAAAAAGGTTAACAAATTCAAAGGGAGAAACAAAAAGAGTGAAACAAGAGACAAGTTTGTTGGGGTGAGACAAAGACCATCAGGTAGATATGTTGCTGAGATAAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTTGAAACAGCTGAGGAAGCAGCAAGAGCTTATGATGAAGCCGCGACACTTCTTCGCGGTTCCAAAACTCGTACCAACTTCGTCACACATGTTTCTTATGATTCCCCTCTCGCTTCTCGGATTCGACATCTTCTCAACAACCGAAAAAAAGGTACCAAACAGCAAGACATGAATGGTATAAGTAGCACCACTAGCCATGCTGACACGACTAATGATACTACTAGCGATGGTAGTACTAGTAGCACTACTAACTGTATTGGCACAGCCAGTGGTGCTATTAATAGTACTAGTGCCAGCGGTGTGACTAGCACTAGTACTAATATTAGTACTAGTGCTAGCGGTGTGGCTAGCACTAGTACTGATATTAGTACTAATTCGAGCAATACCAACGTCAACGACAAAAGTGAAAGCTTGCTTTCTAGTTCGACAACGATGCAAAAACCAAATTTATTTGAGGATGCATATAGGCCAGATATGAGCAATTTAACTAATGAATATGAGTCAAGTTCCTATAAGTCCAATGTTTCATGGGATTTTGGACCTATTTTTGATAACTTTCCTTTTGATCAATGGTTGGATATGACAAACAATGATGGATTATTGTGTGATATGGTTGATAAAGGAGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTTCAAGAGTACATGAAAAATGTTCAGGATTGCAATGAAGCTCAATGGAATCTTTCACCTTTGTGCTAA 942 0.3843 MEIQFDEPKKSLRPKKVNKFKGRNKKSETRDKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAARAYDEAATLLRGSKTRTNFVTHVSYDSPLASRIRHLLNNRKKGTKQQDMNGISSTTSHADTTNDTTSDGSTSSTTNCIGTASGAINSTSASGVTSTSTNISTSASGVASTSTDISTNSSNTNVNDKSESLLSSSTTMQKPNLFEDAYRPDMSNLTNEYESSSYKSNVSWDFGPIFDNFPFDQWLDMTNNDGLLCDMVDKGVSEFERMKVERQISASLYAINGVQEYMKNVQDCNEAQWNLSPLC* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0823 313 Gene3D AP2/ERF domain 31 91 IPR036955 GO:0003700|GO:0006355
Mtr6g0823 313 MobiDBLite consensus disorder prediction 112 143 - -
Mtr6g0823 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 304 - -
Mtr6g0823 313 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 304 - -
Mtr6g0823 313 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Mtr6g0823 313 SMART rav1_2 32 96 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 MobiDBLite consensus disorder prediction 157 204 - -
Mtr6g0823 313 MobiDBLite consensus disorder prediction 108 143 - -
Mtr6g0823 313 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Mtr6g0823 313 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0823 Mtr-Chr6 10504336 10505548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0823 14 107 AP2-EREBP Transcription Factor Family AT5G19790 68.085 5.30e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g0823 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0823 K09286 - gmx:100782886 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2356 7 40037044 40038440 Mtr6g0823 6 10504336 10505548 PCT