Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0804 ATGAAGATTCCCAGAAAATCGAGTAGTAGCAATGGTGATTCAAACTCTTCATCGTCATCATTTCTTGTTCAACACGCAACCCTAATTCTACCATACCTAACCCATACACAACTCGCCAACATCTCCCTAACCTGCAAATCACTCTATAAACTCACCCAAATCATCACCCTCCGTCGCATTTCCGACGCTTCCAGAACCTTCGAGAATTATCCAATCCCATTTTTCAATACCAACAACAACAACAACCCTCCTTACTCCTACTTTCTCTACACACCTTCCCTTATTCTCTCTCACAACACCCCCAATTATCAACCATGGGGTGCTGGAGAGGGTGCTTTTGTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGGTTGTGATTTTGAAGGTGTTTGTGAAAATGGGTCAGTGAGTTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGGAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAACGATCCATGATGTTGGGTTGGTGAGATTTGGTGTTGGATGTGAAAATGGGAAGGTGGAAAGCGGTGGAATGAGTTCAGTTATTTCACCAGTGCCGCTTAGAACGGTTGACGATGATGAGTCGGTGAGTTTTGGTGTGGGATGTGAGTGTGAAGGTATTTGTGATGATGAGTGTATGTGTTTTTCTGATGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGTTGGATTGTTTATGTGGGATGGAGTGTGGGAATAGGGTGAGTCAAAATGGGGTTAATGTCAGGGTTAAGATTGTTTGGTGTGGTGGTGGGAAAGGGTGGGGTTTGTTTGCGAATCAGGTTGTGCGTAAAGAGGAGTTTTTGTTTCAATATGCAGGTGAACTATTGACAACCACGGAAGCACAGAGGAGACAACAACATTACGATGAACTGGCATCGCGTGGTCGTTTCTCGTCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAGAATCGGAAACGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTTCGAAAGATATCCAAAAAGATGAAGAGCTTGCTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAATGGGCGGCTGTGTCACTGCAACAGCCCTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA 1275 0.4447 MKIPRKSSSSNGDSNSSSSSFLVQHATLILPYLTHTQLANISLTCKSLYKLTQIITLRRISDASRTFENYPIPFFNTNNNNNPPYSYFLYTPSLILSHNTPNYQPWGAGEGAFVISDDGSVRFGVGCDFEGVCENGSVSFGVGCNFQGVCDDGSVGDGGGSSVISPIPPRTIHDVGLVRFGVGCENGKVESGGMSSVISPVPLRTVDDDESVSFGVGCECEGICDDECMCFSDDGVDGIGRECGLDCLCGMECGNRVSQNGVNVRVKIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSTGALFPRLCFFASKDIQKDEELAFSYGEIRKRSNGRLCHCNSPSCLGTLPSEDT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0804 424 ProSiteProfiles SET domain profile. 264 397 IPR001214 GO:0005515
Mtr6g0804 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 413 - -
Mtr6g0804 424 SMART set_7 264 403 IPR001214 GO:0005515
Mtr6g0804 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 413 - -
Mtr6g0804 424 Gene3D SET domain 179 424 IPR046341 -
Mtr6g0804 424 SUPERFAMILY SET domain 211 417 IPR046341 -
Mtr6g0804 424 Pfam SET domain 276 397 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0804 Mtr-Chr6 10168033 10171616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0804 242 419 C2H2 Transcription Factor Family AT2G23740 32.973 2.22e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr6g0804 SET 3.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0804 K11433 - cpap:110807781 321.242