Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0789 ATGGTGAATTGTGATCACTGTTTGAGGAACGTTTCTGGAACTCGAATTGACGAGGGTCAATTGTGTTGTGAGTATTGTGGGAAGGTGTTGGAAGAATGCTTTTTATCTAACGAGCCAACTTTTCAGAAAGGCGCTGCTGGACAGAGCAAATTCTCAGGCAATTTGATAAGGGCGGTTAATGAAATGGCTGACTCACGTCAAAGGACTACAGATAGAGCTACAGAAAATATTAGAAATCTATGTCGCAACCTTGGAATGGATGATTATAGTGTAGCTGATGCAGCTGTGAAATTTTATATAATAGGACTAGAGAAAAACTTTACCAGGGGACGTAGATCTGAACTTGTACAAGCTGCTTGTCTCTATCTTGCATTCCGGGATAACGATAAGCCATACCTTCTTATTGATTTTTCAAATGCTATAAGGACAAATGTTTATGCGCTTGGCTCAGTTTTTTTGCAGCTTTTGAAAGTGTTAAGGCTTGAAGAACACCCGATTGCTCGAAAGCTTGTTGATCCCAGTCTTTTTATTTTCAAATTTACACATACTTTGTTAAAGCAAAGGAATGTGGCTGTCTCTGAATCTGCGCTGAATATTCTTTCTGACATGAAACGTAACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCTGCGTTATACATGGCTGCTCTTGCAAATGGTTTTCCATGCTCGAAATCAGATGTTCTAAGAGTCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGATAGAGTTTGAGAACACAGAGTCTTCCAGCTTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAACCGTCCAATTAAAATACCAAATGGTGAACCGACCAAATACATTCCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGGGGACCCCCTAACAAAGAAGAAGAAGAAGAAGGACCCCCTAAGGTGTGAACACAAGGGTATGGATCCTCCAATACCCCTCTTTGCACTTGGATTGTGCGAAACATGTTACAGATTTTTTGATAAACTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAAGGATAGAATGGTGAAGTCACATTCTGAGGAGAATGCTAATAAATCAGATGATTTGGCAATGGATTCAAATGATGCATACGAGAGCCAAATAGAGTTGCATACCTCCGAGCCTGGAAATATTGGGGGAGAGCATGTGGCCACTAAAGATGGTGAACATGATGAGTCTCGTATAGAAGATGATATGAATGAAAAAACTCATGATGAATCAGAAAGTCTCTCTGATATTGATGATAAGGAGGTTGATGGCTACCTTCACAACGAAGAGGAAACACGTTACAAGAAGCAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTGTCAAGGAAGCAGCTGCAGCAGCTGAAAGGAGAAGATTAGAGGAGGAATTAAAAAATTGTACCCCTGAAGAGCGTGAAGCAAGAGAACTTAAGGGAGCTGTTGCTGCAGATGTGGCAAAATCCAGAAAGGAAAAGAGAAAACAACGAGCTGAAGAGGAAAGAAGGTTGGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGCCGAATGTTGAAAACAAAGAGGCTCAGCTCCAAAGTCAATTTGGATCGCTTGGATAAATTATTCGATAAACCTGCAGCTCCAGAGAATCCCAAGAAAGTACGATTTGAAACAAAGGAGGATGAATTGGAACCAGTCAACGAATTTCCGGCTGATGAAGATATGTATGCAGAATATGATGATACTATGTATCCAGAAAATAACTACGAGACATACGACTACGAGGAAGCCGGTGGTTTTTATGAATATTGA 1875 0.4208 MVNCDHCLRNVSGTRIDEGQLCCEYCGKVLEECFLSNEPTFQKGAAGQSKFSGNLIRAVNEMADSRQRTTDRATENIRNLCRNLGMDDYSVADAAVKFYIIGLEKNFTRGRRSELVQAACLYLAFRDNDKPYLLIDFSNAIRTNVYALGSVFLQLLKVLRLEEHPIARKLVDPSLFIFKFTHTLLKQRNVAVSESALNILSDMKRNWMQTGRKPSGLCGAALYMAALANGFPCSKSDVLRVVHVCEATLTKRLIEFENTESSSLTIDELNAMAKEHENRPIKIPNGEPTKYIPEEEEEEEEEGEEGDPLTKKKKKKDPLRCEHKGMDPPIPLFALGLCETCYRFFDKLSGGLGGGLDPPAFQRAEKDRMVKSHSEENANKSDDLAMDSNDAYESQIELHTSEPGNIGGEHVATKDGEHDESRIEDDMNEKTHDESESLSDIDDKEVDGYLHNEEETRYKKQIWEFNNREYLEEQAVKEAAAAAERRRLEEELKNCTPEEREARELKGAVAADVAKSRKEKRKQRAEEERRLGPAQSAVEATSRMLKTKRLSSKVNLDRLDKLFDKPAAPENPKKVRFETKEDELEPVNEFPADEDMYAEYDDTMYPENNYETYDYEEAGGFYEY* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0789 624 Pfam Transcription factor TFIIB repeat 168 258 IPR013150 GO:0017025
Mtr6g0789 624 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Mtr6g0789 624 MobiDBLite consensus disorder prediction 496 543 - -
Mtr6g0789 624 CDD CYCLIN 172 247 IPR013763 -
Mtr6g0789 624 MobiDBLite consensus disorder prediction 400 444 - -
Mtr6g0789 624 Gene3D - 172 263 - -
Mtr6g0789 624 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 567 IPR029529 GO:0000126|GO:0000995|GO:0006383
Mtr6g0789 624 MobiDBLite consensus disorder prediction 496 533 - -
Mtr6g0789 624 MobiDBLite consensus disorder prediction 563 586 - -
Mtr6g0789 624 SUPERFAMILY Cyclin-like 73 162 IPR036915 -
Mtr6g0789 624 CDD CYCLIN 77 142 IPR013763 -
Mtr6g0789 624 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Mtr6g0789 624 PRINTS Transcription initiation factor IIB signature 118 137 IPR000812 GO:0006352|GO:0070897
Mtr6g0789 624 PRINTS Transcription initiation factor IIB signature 212 228 IPR000812 GO:0006352|GO:0070897
Mtr6g0789 624 MobiDBLite consensus disorder prediction 278 326 - -
Mtr6g0789 624 Gene3D Single helix bin 430 481 - -
Mtr6g0789 624 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 567 IPR000812 GO:0006352|GO:0070897
Mtr6g0789 624 MobiDBLite consensus disorder prediction 563 595 - -
Mtr6g0789 624 MobiDBLite consensus disorder prediction 306 324 - -
Mtr6g0789 624 Pfam Brf1-like TBP-binding domain 439 564 IPR011665 -
Mtr6g0789 624 Gene3D - 62 164 - -
Mtr6g0789 624 MobiDBLite consensus disorder prediction 411 444 - -
Mtr6g0789 624 Coils Coil 471 491 - -
Mtr6g0789 624 SMART cyclin_7 75 157 IPR013763 -
Mtr6g0789 624 SMART cyclin_7 175 258 IPR013763 -
Mtr6g0789 624 SUPERFAMILY Cyclin-like 170 263 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0789 Mtr-Chr6 10001328 10015656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0789 1 548 Inorganic Solute Cotransporters AT2G01280 41.591 1.58e-102 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0789 K15196 - gmx:100817609 562.377