Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0777 ATGGGAAGTAGAAAGGAAGAAGAGAAGATTGAGAAAATTATTAGGGGGCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGTATGTACAACGTTTTGGACCTTTGTTTGCATCACTTGCAGTGGAATACACCGCGAGTTTACTCACCGTGTGAAGTCAGTTTCAATGGCAAAGTTCAATTTTCAAGAGGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGATTTATATTTAAAAGATTGGGACTTCCAAAGACAACGGTTGCCAGATAGCAGCAATGTCAACAAAGTAAGGGAGTTCATAAGGAATGTATATGTGGATAAAAGATATGCTGGAACAAAGTTGGCTGAAAAGCCTCCGAGAGATGCACAGAGCCCTTCAATTAATGAAGACGAGGTTAGGCGTGCCAGTTCTTATCATTCATATTCACAAAGTCCTCCATATGATAATCAATACGAGGATCGACGCTATGGAACACAAGCAGGGGCTCTGACAAGAAAGCCTGGTTCAGATAAAGTCCGTTATGAAGGGAAGATGGCTAGTATTATTTTTAGTCCTGGTCGTTTAAGTGATCACTCGTATGATGAGAGATTTGCTAATGAGGGATCTGGTCCAAGAAATTCCGACTTTTCTGTGTCTAGTGGTCGTGAGCAATTCAAGCCTGATGTTCAGTCTCCTAAGTTTGGGTTTAACAGTCCATCTTATAAGCGTCCTGGTTCTAGTTCAAGTGAAGATGTGTGGACTCAAGCAAAGATTGCAGCTCTCGAATCTAATGCCGCTGCCAAGAGAGATGCAGATGGAATTCATCGTCCTCAGAGAACTACATCATTGCAACCAAGAGACAACAACCTTTCGACCTTAAGATCTGACAACTCTGGTGGTCCAGTTGATTTTTTCTCAGAAGCTTTCCAATCTTCAGGGTCCGGAAATTCACTGACATCTGGTCCTGCAAGATCGGTTAGCTTGGACCTTTCCAAGGCACCAGCGGCATCAGCTTCATCTATTGATCTTTTTCAAACGGTTGTACCATCTCAATCTGCATTAGGAGATCTGTTTCAACTATCTGATAAGGAAGCAGCTCCATCTTTCAAGGGAAGTCAACCTACGCAAACACCCCAAGTCGCATCTATTGATTTCTTTGCGGATCTTCCTCAGCAGCAGCCTTCTGCTGCAACCTCAGATGCAAAATCAGTGGAGTTATTCATCCCTAAAAATGAAGGTTGGGCAACATTTGATACGCCTCAGTTCACATCATCTACTACACAAGTGGAAATTCCTGCGGCAGTTCCTTCAAGTGCTGAATCTTCGCAGGATAGATTTGATCCATTCTCTACTGCACAAGTGGAAATTCCTGCGCCAGTACCTTCAAGTGTTGAATCTTTACAGGATAGGTTTGAGCCATTTTCAACCTTAAATGGAAATTTCCAAATGCCATCTTTTGAAATGCCTAGTGTCGGTGTACCTTCAACTGTTACATCTAATGTATGGCATGATGGTGTATGGAATGGAGAAAAACAAGTTCCTGTTATGGCAACAGACACTCAACCATGGAATGCATTTGAAGATTTTGGTACCCATCTTCCAGTGGATGTCAATAATCAAGTATTACAATCGCATAATTTCCCATCAGAAAGTTTTGGTTTAAGTGCTTCTGAGGTACCCATTAAAGATGGAATCCAAGGCGTTGCTCCTATTGGAGGGTTTGATAATCATGAATTCCCATCAAATGGAGATATTCAACCTAATGGAATCAATCGTAAATCAACTAATCCATTTGATTTTCCCTTTGATTCTGATGTAGAACAGAACAATATGTTTCTTGATATGAACTCTTTGCAAGCTGCTTTGCCAGATGCCCTTTTGCCAGCCACATTTGGTGGTATCCCTGAACCTTGGCTCCCTCAAAATACAGTGACCCCATATATTTCATCTGCAGAAGGTGGTTTCTCATTCATGGCCGTGCACACACCAAGTTCTCAATTACAGAACATCCAAGCACAGGAACCAGTTGCGTCGTTTGGCGGAAATCCTTTTGCATAG 2073 0.4216 MGSRKEEEKIEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCITCSGIHREFTHRVKSVSMAKFNFQEVDALQNGGNQRARDLYLKDWDFQRQRLPDSSNVNKVREFIRNVYVDKRYAGTKLAEKPPRDAQSPSINEDEVRRASSYHSYSQSPPYDNQYEDRRYGTQAGALTRKPGSDKVRYEGKMASIIFSPGRLSDHSYDERFANEGSGPRNSDFSVSSGREQFKPDVQSPKFGFNSPSYKRPGSSSSEDVWTQAKIAALESNAAAKRDADGIHRPQRTTSLQPRDNNLSTLRSDNSGGPVDFFSEAFQSSGSGNSLTSGPARSVSLDLSKAPAASASSIDLFQTVVPSQSALGDLFQLSDKEAAPSFKGSQPTQTPQVASIDFFADLPQQQPSAATSDAKSVELFIPKNEGWATFDTPQFTSSTTQVEIPAAVPSSAESSQDRFDPFSTAQVEIPAPVPSSVESLQDRFEPFSTLNGNFQMPSFEMPSVGVPSTVTSNVWHDGVWNGEKQVPVMATDTQPWNAFEDFGTHLPVDVNNQVLQSHNFPSESFGLSASEVPIKDGIQGVAPIGGFDNHEFPSNGDIQPNGINRKSTNPFDFPFDSDVEQNNMFLDMNSLQAALPDALLPATFGGIPEPWLPQNTVTPYISSAEGGFSFMAVHTPSSQLQNIQAQEPVASFGGNPFA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0777 690 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 690 - -
Mtr6g0777 690 CDD ArfGap_AGFG 15 121 - -
Mtr6g0777 690 MobiDBLite consensus disorder prediction 215 254 - -
Mtr6g0777 690 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Mtr6g0777 690 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Mtr6g0777 690 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Mtr6g0777 690 MobiDBLite consensus disorder prediction 282 308 - -
Mtr6g0777 690 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Mtr6g0777 690 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Mtr6g0777 690 MobiDBLite consensus disorder prediction 272 308 - -
Mtr6g0777 690 MobiDBLite consensus disorder prediction 205 254 - -
Mtr6g0777 690 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Mtr6g0777 690 MobiDBLite consensus disorder prediction 126 165 - -
Mtr6g0777 690 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 134 IPR001164 GO:0005096
Mtr6g0777 690 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Mtr6g0777 690 PANTHER ARFGAP/RECO-RELATED 1 690 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0777 Mtr-Chr6 9824383 9834099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0777 14 88 C2H2 Transcription Factor Family AT4G05330 35.443 3.58e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0777 K15044 - gmx:100788316 930.243