Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0729 ATGTCCTCTCAAGACGGCGTCGGTCGAGTTCATGGCGGTGTGATTCTTAGCGGCTTCGATGATGAGACGGATGCCCGGAGGTTTCTCAAAGAGTTGTGGAGTGCAATCTTTATGGTGAAGGCTGCTTTTTTAAAAGAGAAGTGGGGTTGCACACTAAACTCCACTGCCAAAGGCGTGTCCTATATCACTGCTCAACAACGCTCCGATAGGTCATCGGAAAGTGGATTTTCATTTGTAAACAGCACGGTAAAAGGCAGCGGACTTGTTTATCTGGGAAGACCATGGGCTAATTACTCAAGAGTTGTTTTCTCTTATACCTATATGGACAAAAATGTTCTCCCTAAAGGATGGGATAATCATTTTGATGACGAGAAAAACGTGACAAAATTATATTATGGCGAATACAAGTGCTTCGGACCTGGATCCAACTTCACCGAAAGAGCTCCATGGGTACGACGTCTGACAGATGAAGAGGCCCAACAATTCATCAGCATACAGTTCATCCTAGGAAATACATGGCTCAATGGCCCTCACAATTAG 540 0.4481 MSSQDGVGRVHGGVILSGFDDETDARRFLKELWSAIFMVKAAFLKEKWGCTLNSTAKGVSYITAQQRSDRSSESGFSFVNSTVKGSGLVYLGRPWANYSRVVFSYTYMDKNVLPKGWDNHFDDEKNVTKLYYGEYKCFGPGSNFTERAPWVRRLTDEEAQQFISIQFILGNTWLNGPHN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0729 179 SUPERFAMILY Pectin lyase-like 51 175 IPR011050 -
Mtr6g0729 179 Pfam Pectinesterase 55 171 IPR000070 GO:0030599|GO:0042545
Mtr6g0729 179 Gene3D - 34 178 IPR012334 -
Mtr6g0729 179 PANTHER PECTINESTERASE 49 175 - -
Mtr6g0729 179 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 49 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0729 Mtr-Chr6 8897284 8899352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0729 62 174 Carbohydrate Esterase AT1G05310 46.018 1.31e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0729 K01051 - cit:102614801 164.466