Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0728 ATGATGCTTTGTTGCGGGACTGTTATTGGAATTGAATGCAAAGATGAGGTTGTGATGGCCTTAGCAGGATTAGCTGCAGATGGAATGCAAATTGTTGCCGGGGCTAAGTCGGAAGCATATAACTATGACAGCTGCGTGTACGGTGATCCAATTCCTGTCAAGGAACTTGCTGATCACGTGGCTAGTTATGTGCACCTTTGTATTTTGAAACCTATGATGTTGCCAAACTGTATATATGGAGTTCATGACGAGGCAAAGGATAAAGATTTCGAGCTTGAAATGAGCTGGGTGTGTGAGGAATCAAACCGTCAACATGAAAAGACTGCTTTTACATCTAAGAAAGACTATGGGACGGAAGATAGGGCAGCAAAGTGGGTTCTTTCTCAGGCTTCGAGCAACGAGTTTTGGAGGAGCACTGTTCGTTTGGACTTGCTAGAGGCTTTGCTGCTTGCTGCTTGCTTTGTTGTGATCGTGATTCCAGTTTCCAGCTTTCAGATTCCACACTTCGAGATATTCTTTCTTCAGTTTTTCTGCATTGTTATTTTGATATCATCTTCCTCATCTTTCTCAAATGGCCTTGATTTCAAGCTTCGACAGGCTGAGGCCAATCCTGTGATAATCAAAGTAAGTAAAGATGCATCATCAAAGTTCAAGACTATTCAAGAGGCTCTGAATAGCATTCCACCACAAAATAATAGGAGAGTCATTGTTTCAATTGCTGCTGGAGTTTATAGGGAGAAGATCCTCGTCAAACTCCCTTTCATCACTTTCTTAGGGGATCCAACAGATCAGCCTATTGTTATCGGGAATGATACAGCACATGACATTGGAGGTGATGGGAAACCATTGAGGACATTAAATAGTGCAACTGTCGCCGTGGATTCAGACTATTTCATTGCAGTTAACATGAAATTTCAGAACACGGCATCACCTCGTATTGGGTCAAATGATGATCAAGCCGTTGCACTTCGCACTTCAGGAAACAAAAGTGCGTTTTACAACTGCTCGTTTTACGGATTTCAGGACACATTATATGATCATCAGGGGTTGCATTATTTTGAAAACTGCTTTATTCAAGGCTCCGTGGATTTCATCTTCGGCCATGGGAGATCCCTTTATGAGGGTTGCATTATAAAGTCCATAGCCGAGAAGATGGGATTTATCACTGCTCAAGACAGATCAAAAGAGTCAATGGAGAGTGGATTTTCCATTCAAAATAGCCATGCAATAGGCAGTGGGAAAGTTTATCTGGGAAGACCTTGGGGAGTGTACTCGAGAGTCATTTACTCTTACACCAGCATGGACAATCTTATTTTCCCCCAAGGATGGGATGATACTATGGATAATCAAAATCGCAGCTTGACTGTGTACTATGGAGAGTACAAGTGTACTGGGCTTGGATCCAATTTAGCTGGTAGACCTCCTTGGGTACATAGATTAACAGACACAGAGGCACGGCAGTTTATCGGCACACAGTTCATTCAGGGTGATACATGGCTGGTCAGGCCTAGTTAG 1515 0.4284 MMLCCGTVIGIECKDEVVMALAGLAADGMQIVAGAKSEAYNYDSCVYGDPIPVKELADHVASYVHLCILKPMMLPNCIYGVHDEAKDKDFELEMSWVCEESNRQHEKTAFTSKKDYGTEDRAAKWVLSQASSNEFWRSTVRLDLLEALLLAACFVVIVIPVSSFQIPHFEIFFLQFFCIVILISSSSSFSNGLDFKLRQAEANPVIIKVSKDASSKFKTIQEALNSIPPQNNRRVIVSIAAGVYREKILVKLPFITFLGDPTDQPIVIGNDTAHDIGGDGKPLRTLNSATVAVDSDYFIAVNMKFQNTASPRIGSNDDQAVALRTSGNKSAFYNCSFYGFQDTLYDHQGLHYFENCFIQGSVDFIFGHGRSLYEGCIIKSIAEKMGFITAQDRSKESMESGFSIQNSHAIGSGKVYLGRPWGVYSRVIYSYTSMDNLIFPQGWDDTMDNQNRSLTVYYGEYKCTGLGSNLAGRPPWVHRLTDTEARQFIGTQFIQGDTWLVRPS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0728 504 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Mtr6g0728 504 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 10 102 IPR029055 -
Mtr6g0728 504 Pfam Pectinesterase 207 497 IPR000070 GO:0030599|GO:0042545
Mtr6g0728 504 PANTHER PECTINESTERASE 191 501 - -
Mtr6g0728 504 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 191 501 - -
Mtr6g0728 504 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 6 84 IPR029055 -
Mtr6g0728 504 Pfam Proteasome subunit 12 71 IPR001353 GO:0005839|GO:0051603
Mtr6g0728 504 Gene3D - 203 503 IPR012334 -
Mtr6g0728 504 SUPERFAMILY Pectin lyase-like 204 500 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0728 Mtr-Chr6 8841539 8873112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0728 171 501 Carbohydrate Esterase AT5G47500 38.889 2.95e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0728 K01051 - pop:7455411 408.297